Variant report

Variant	rs34564710
Chromosome Location	chr7:117506351-117506352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116651084-116657331..7:117504074-117506603	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10244364	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10252771	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10259910	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263711	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10267771	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10276758	0.82[EUR][1000 genomes]
rs10487380	0.82[EUR][1000 genomes]
rs13239186	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34031516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34212554	0.91[ASN][1000 genomes]
rs34298216	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34729439	0.81[EUR][1000 genomes]
rs6952555	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6961907	0.83[EUR][1000 genomes]
rs6976111	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs727164	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7776980	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7782815	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv981821	chr7:117504336-117508114	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117469600-117511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:117475600-117506600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:117484400-117510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:117489400-117511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:117490400-117508000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:117490400-117508000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:117501400-117507400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:117501400-117507600	Weak transcription	Brain Germinal Matrix	brain
9	chr7:117501600-117506400	Weak transcription	Adipose Nuclei	Adipose
10	chr7:117501600-117507400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:117502400-117510000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:117502400-117511400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:117502400-117511800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:117502800-117508800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:117502800-117511800	Weak transcription	Pancreas	Pancrea
16	chr7:117503800-117510600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:117504000-117506600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:117504000-117507800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:117504000-117508000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:117504000-117509400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:117504000-117512000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:117504200-117506800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:117504400-117506400	Weak transcription	Brain Angular Gyrus	brain
24	chr7:117504400-117506400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:117504400-117507200	Weak transcription	NHLF	lung
26	chr7:117504400-117511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:117504600-117506400	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:117504600-117510600	Weak transcription	Fetal Stomach	stomach
29	chr7:117506200-117506400	Enhancers	Fetal Brain Female	brain
30	chr7:117506200-117506600	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:117506200-117507200	Enhancers	Brain Anterior Caudate	brain
32	chr7:117506200-117508000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:117506200-117508400	Enhancers	Fetal Lung	lung
34	chr7:117506200-117509600	Enhancers	Fetal Brain Male	brain
35	chr7:117506200-117510000	Enhancers	Brain Inferior Temporal Lobe	brain

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