Variant report

Variant	rs34298216
Chromosome Location	chr7:117506810-117506811
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10244364	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252771	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259910	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263711	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267771	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276758	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10487380	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13239186	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34031516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34212554	0.95[ASN][1000 genomes]
rs34564710	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34729439	0.81[EUR][1000 genomes]
rs6952555	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6961907	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6976111	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs727164	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782815	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv981821	chr7:117504336-117508114	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117469600-117511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:117484400-117510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:117489400-117511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:117490400-117508000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:117490400-117508000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:117501400-117507400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:117501400-117507600	Weak transcription	Brain Germinal Matrix	brain
8	chr7:117501600-117507400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:117502400-117510000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:117502400-117511400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:117502400-117511800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:117502800-117508800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:117502800-117511800	Weak transcription	Pancreas	Pancrea
14	chr7:117503800-117510600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:117504000-117507800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:117504000-117508000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:117504000-117509400	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:117504000-117512000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:117504400-117507200	Weak transcription	NHLF	lung
20	chr7:117504400-117511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:117504600-117510600	Weak transcription	Fetal Stomach	stomach
22	chr7:117506200-117507200	Enhancers	Brain Anterior Caudate	brain
23	chr7:117506200-117508000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:117506200-117508400	Enhancers	Fetal Lung	lung
25	chr7:117506200-117509600	Enhancers	Fetal Brain Male	brain
26	chr7:117506200-117510000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr7:117506400-117507000	Enhancers	Adipose Nuclei	Adipose
28	chr7:117506400-117507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:117506400-117510000	Enhancers	Brain Angular Gyrus	brain
30	chr7:117506400-117510800	Enhancers	Brain Hippocampus Middle	brain
31	chr7:117506400-117510800	Enhancers	Brain Substantia Nigra	brain
32	chr7:117506600-117507400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:117506800-117507200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:117506800-117507400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:117506800-117507400	Active TSS	Fetal Brain Female	brain
36	chr7:117506800-117508800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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