Variant report

Variant	rs34212554
Chromosome Location	chr7:117525037-117525038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10244364	0.95[ASN][1000 genomes]
rs10252771	0.92[ASN][1000 genomes]
rs10259910	0.88[ASN][1000 genomes]
rs10263711	0.95[ASN][1000 genomes]
rs10267771	0.95[ASN][1000 genomes]
rs13239186	0.95[ASN][1000 genomes]
rs34031516	0.95[ASN][1000 genomes]
rs34298216	0.95[ASN][1000 genomes]
rs34564710	0.91[ASN][1000 genomes]
rs6952555	0.85[ASN][1000 genomes]
rs6976111	0.89[ASN][1000 genomes]
rs727164	0.87[ASN][1000 genomes]
rs7776980	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117523800-117527400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117524600-117525200	Enhancers	Fetal Brain Male	brain
3	chr7:117524800-117536200	Weak transcription	Esophagus	oesophagus
4	chr7:117525000-117527600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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