Variant report

Variant	rs35690795
Chromosome Location	chr8:96252725-96252726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96144746..96147631-chr8:96251257..96253249,2	K562	blood:
2	chr8:96249665..96253673-chr8:96259430..96262765,4	K562	blood:
3	chr8:96079753..96081863-chr8:96250255..96253131,2	MCF-7	breast:
4	chr8:96240789..96242805-chr8:96252372..96254385,3	K562	blood:
5	chr8:96240965..96243166-chr8:96252025..96254042,3	K562	blood:

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13260234	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13267037	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13267333	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13267612	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13271205	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13276926	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34196697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34289076	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34389602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34463279	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34861861	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34962193	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35175236	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35195888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35511040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35530445	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35543354	0.92[EUR][1000 genomes]
rs35559164	0.92[EUR][1000 genomes]
rs35809593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36032317	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55677759	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56237137	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58471124	0.92[EUR][1000 genomes]
rs58979833	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7004873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71532351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71532352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71532353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894149	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv971599	chr8:96249324-96255153	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96254600	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
6	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
7	chr8:96248400-96262200	Weak transcription	HepG2	liver
8	chr8:96249000-96280800	Weak transcription	Gastric	stomach
9	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
10	chr8:96250400-96261800	Weak transcription	Spleen	Spleen
11	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
12	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
14	chr8:96251400-96254400	Weak transcription	Fetal Lung	lung
15	chr8:96251400-96259800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:96251400-96260200	Weak transcription	Primary B cells from cord blood	blood
17	chr8:96251800-96258800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:96252200-96263400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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