Variant report

Variant	rs35559164
Chromosome Location	chr8:96270870-96270871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89603716..89605237-chr8:96269842..96271477,2	MCF-7	breast:
2	chr8:96106555..96108978-chr8:96268988..96271569,2	K562	blood:
3	chr8:96267545..96271748-chr8:96279577..96283221,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs13248616	0.81[AMR][1000 genomes]
rs13250483	0.81[AMR][1000 genomes]
rs13257305	0.81[AMR][1000 genomes]
rs13260234	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267037	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267333	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267612	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268060	0.81[AMR][1000 genomes]
rs13271205	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276926	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994794	1.00[ASN][1000 genomes]
rs34196697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34202133	0.81[AMR][1000 genomes]
rs34289076	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389602	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463279	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861861	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961968	0.81[AMR][1000 genomes]
rs34962193	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141355	1.00[ASN][1000 genomes]
rs35175236	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35195888	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273564	1.00[ASN][1000 genomes]
rs35511040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530445	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35543354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690795	0.92[EUR][1000 genomes]
rs35809593	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032317	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096184	1.00[ASN][1000 genomes]
rs55677759	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186143	1.00[ASN][1000 genomes]
rs56237137	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57183551	1.00[ASN][1000 genomes]
rs58191899	1.00[ASN][1000 genomes]
rs58229316	1.00[ASN][1000 genomes]
rs58471124	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979833	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59707579	1.00[ASN][1000 genomes]
rs60835162	1.00[ASN][1000 genomes]
rs61185934	1.00[ASN][1000 genomes]
rs61730929	1.00[ASN][1000 genomes]
rs61730932	1.00[ASN][1000 genomes]
rs61995709	1.00[ASN][1000 genomes]
rs61997199	1.00[ASN][1000 genomes]
rs6471526	1.00[ASN][1000 genomes]
rs7004873	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532351	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532352	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532353	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266490	1.00[ASN][1000 genomes]
rs73268303	1.00[ASN][1000 genomes]
rs73268328	1.00[ASN][1000 genomes]
rs73695429	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695431	1.00[ASN][1000 genomes]
rs73695432	1.00[ASN][1000 genomes]
rs73695433	1.00[ASN][1000 genomes]
rs73695435	1.00[ASN][1000 genomes]
rs73695436	1.00[ASN][1000 genomes]
rs73695437	1.00[ASN][1000 genomes]
rs73695438	1.00[ASN][1000 genomes]
rs73695439	1.00[ASN][1000 genomes]
rs7814173	1.00[ASN][1000 genomes]
rs7815085	1.00[ASN][1000 genomes]
rs7841828	1.00[ASN][1000 genomes]
rs894149	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
4	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
5	chr8:96249000-96280800	Weak transcription	Gastric	stomach
6	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
7	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
8	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
10	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
11	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
12	chr8:96256800-96280400	Weak transcription	Lung	lung
13	chr8:96257000-96271400	Weak transcription	A549	lung
14	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:96257400-96271000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:96257400-96271400	Weak transcription	Ovary	ovary
17	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
19	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:96258800-96271400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
24	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
27	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
32	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
33	chr8:96262400-96271000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr8:96262600-96280400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:96262800-96271400	Weak transcription	Fetal Brain Female	brain
36	chr8:96263200-96280400	Weak transcription	Placenta	Placenta
37	chr8:96264200-96271000	Weak transcription	Primary B cells from cord blood	blood
38	chr8:96264200-96271400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:96264200-96276800	Weak transcription	Primary T cells from cord blood	blood
40	chr8:96264200-96280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:96264200-96280400	Weak transcription	Liver	Liver
42	chr8:96264200-96280400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:96264200-96280400	Weak transcription	Brain Substantia Nigra	brain
44	chr8:96264400-96280000	Weak transcription	Brain Angular Gyrus	brain
45	chr8:96266000-96280400	Weak transcription	Fetal Intestine Small	intestine
46	chr8:96267000-96280400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr8:96267600-96271600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:96268600-96271000	Strong transcription	Fetal Muscle Leg	muscle
49	chr8:96268600-96271400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:96268800-96276200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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