Variant report

Variant	rs60835162
Chromosome Location	chr8:96286101-96286102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96285143..96287149-chr8:96306307..96308487,2	K562	blood:
2	chr8:96280353..96283480-chr8:96283563..96287896,7	K562	blood:
3	chr8:96285088..96287347-chr8:96288286..96290521,2	K562	blood:
4	chr8:96264938..96266728-chr8:96285414..96287456,2	K562	blood:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13260234	1.00[ASN][1000 genomes]
rs13267037	1.00[ASN][1000 genomes]
rs13267333	1.00[ASN][1000 genomes]
rs13267612	1.00[ASN][1000 genomes]
rs13271205	1.00[ASN][1000 genomes]
rs13276926	1.00[ASN][1000 genomes]
rs1994794	1.00[ASN][1000 genomes]
rs34196697	1.00[ASN][1000 genomes]
rs34289076	1.00[ASN][1000 genomes]
rs34389602	1.00[ASN][1000 genomes]
rs34463279	1.00[ASN][1000 genomes]
rs34861861	1.00[ASN][1000 genomes]
rs34962193	1.00[ASN][1000 genomes]
rs35141355	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175236	1.00[ASN][1000 genomes]
rs35195888	1.00[ASN][1000 genomes]
rs35273564	1.00[ASN][1000 genomes]
rs35511040	1.00[ASN][1000 genomes]
rs35530445	1.00[ASN][1000 genomes]
rs35543354	1.00[ASN][1000 genomes]
rs35559164	1.00[ASN][1000 genomes]
rs35809593	1.00[ASN][1000 genomes]
rs36032317	1.00[ASN][1000 genomes]
rs36096184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677759	1.00[ASN][1000 genomes]
rs56186143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237137	1.00[ASN][1000 genomes]
rs57183551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58191899	1.00[ASN][1000 genomes]
rs58229316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58471124	1.00[ASN][1000 genomes]
rs58979833	1.00[ASN][1000 genomes]
rs59707579	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61730929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61730932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61997199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471526	1.00[ASN][1000 genomes]
rs7004873	1.00[ASN][1000 genomes]
rs71532351	1.00[ASN][1000 genomes]
rs71532352	1.00[ASN][1000 genomes]
rs71532353	1.00[ASN][1000 genomes]
rs73266490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695429	1.00[ASN][1000 genomes]
rs73695431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695432	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894149	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96282800-96286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:96284600-96286800	Enhancers	Placenta	Placenta
3	chr8:96285400-96287000	Enhancers	Fetal Muscle Leg	muscle
4	chr8:96285600-96286200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:96285600-96286200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:96285600-96286200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:96285600-96286400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr8:96285600-96286400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:96285600-96286600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:96285600-96286800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:96285800-96286200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:96285800-96286400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:96286000-96286200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:96286000-96286400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:96286000-96286400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:96286000-96286600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr8:96286000-96287000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:96286000-96287200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links