Variant report

Variant	rs13267037
Chromosome Location	chr8:96263842-96263843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96124960..96126763-chr8:96260721..96264387,3	MCF-7	breast:
2	chr8:96262492..96264147-chr8:96281511..96283438,2	MCF-7	breast:
3	chr8:96145046..96147483-chr8:96262186..96264321,3	MCF-7	breast:
4	chr8:95908507..95910236-chr8:96263577..96266510,2	MCF-7	breast:
5	chr8:96145054..96147095-chr8:96263375..96266353,3	MCF-7	breast:
6	chr8:96263544..96265203-chr8:96266424..96268396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000175305	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs13248616	0.83[AFR][1000 genomes]
rs13250483	0.89[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13252268	0.85[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13257305	0.83[AFR][1000 genomes]
rs13260234	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267333	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267612	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271205	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272104	0.87[CEU][hapmap]
rs13276119	0.86[CEU][hapmap]
rs13276926	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278690	0.89[CEU][hapmap]
rs1994794	1.00[ASN][1000 genomes]
rs34196697	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289076	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389602	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463279	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861861	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961968	0.92[AFR][1000 genomes]
rs34962193	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35120548	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35141355	1.00[ASN][1000 genomes]
rs35175236	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35195888	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273564	1.00[ASN][1000 genomes]
rs35363033	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35511040	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530445	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35543354	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35559164	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690795	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35809593	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032317	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096184	1.00[ASN][1000 genomes]
rs55677759	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186143	1.00[ASN][1000 genomes]
rs56237137	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57183551	1.00[ASN][1000 genomes]
rs58191899	1.00[ASN][1000 genomes]
rs58229316	1.00[ASN][1000 genomes]
rs58471124	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59707579	1.00[ASN][1000 genomes]
rs60835162	1.00[ASN][1000 genomes]
rs61185934	1.00[ASN][1000 genomes]
rs61730929	1.00[ASN][1000 genomes]
rs61730932	1.00[ASN][1000 genomes]
rs61995709	1.00[ASN][1000 genomes]
rs61997199	1.00[ASN][1000 genomes]
rs6471526	1.00[ASN][1000 genomes]
rs7004873	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532351	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532352	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532353	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266490	1.00[ASN][1000 genomes]
rs73268303	1.00[ASN][1000 genomes]
rs73268328	1.00[ASN][1000 genomes]
rs73695429	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695431	1.00[ASN][1000 genomes]
rs73695432	1.00[ASN][1000 genomes]
rs73695433	1.00[ASN][1000 genomes]
rs73695435	1.00[ASN][1000 genomes]
rs73695436	1.00[ASN][1000 genomes]
rs73695437	1.00[ASN][1000 genomes]
rs73695438	1.00[ASN][1000 genomes]
rs73695439	1.00[ASN][1000 genomes]
rs7814173	1.00[ASN][1000 genomes]
rs7815085	1.00[ASN][1000 genomes]
rs7841828	1.00[ASN][1000 genomes]
rs894149	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
5	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
6	chr8:96249000-96280800	Weak transcription	Gastric	stomach
7	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
8	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
9	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
11	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
12	chr8:96255200-96268600	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
14	chr8:96256800-96280400	Weak transcription	Lung	lung
15	chr8:96257000-96271400	Weak transcription	A549	lung
16	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:96257400-96271000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:96257400-96271400	Weak transcription	Ovary	ovary
19	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:96257800-96265400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
22	chr8:96258000-96270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:96258800-96271400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
28	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
31	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
34	chr8:96262000-96264400	Enhancers	K562	blood
35	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
37	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
38	chr8:96262400-96271000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr8:96262600-96266000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr8:96262600-96280400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:96262800-96271400	Weak transcription	Fetal Brain Female	brain
42	chr8:96263200-96280400	Weak transcription	Placenta	Placenta
43	chr8:96263400-96264200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:96263400-96264200	Strong transcription	Primary B cells from cord blood	blood
45	chr8:96263400-96264200	Strong transcription	Brain Anterior Caudate	brain
46	chr8:96263400-96264200	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:96263400-96264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:96263600-96264200	Strong transcription	Primary T cells from cord blood	blood
49	chr8:96263600-96264200	Strong transcription	Liver	Liver
50	chr8:96263600-96264200	Strong transcription	Brain Inferior Temporal Lobe	brain

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