Variant report

Variant	rs58471124
Chromosome Location	chr8:96283737-96283738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96280353..96283480-chr8:96283563..96287896,7	K562	blood:
2	chr8:95834579..95836869-chr8:96281817..96284598,2	K562	blood:
3	chr8:95907099..95910081-chr8:96279389..96285203,6	K562	blood:
4	chr8:96282451..96284903-chr8:96296240..96298528,2	K562	blood:
5	chr8:96266342..96268440-chr8:96282035..96284401,2	K562	blood:

Variant related genes	Relation type
ENSG00000175305	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000156172	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs13260234	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267037	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267333	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267612	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271205	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276926	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994794	1.00[ASN][1000 genomes]
rs34196697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289076	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389602	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463279	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861861	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34962193	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141355	1.00[ASN][1000 genomes]
rs35175236	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35195888	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273564	1.00[ASN][1000 genomes]
rs35511040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530445	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35543354	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35559164	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690795	0.92[EUR][1000 genomes]
rs35809593	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032317	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096184	1.00[ASN][1000 genomes]
rs55677759	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186143	1.00[ASN][1000 genomes]
rs56237137	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57183551	1.00[ASN][1000 genomes]
rs58191899	1.00[ASN][1000 genomes]
rs58229316	1.00[ASN][1000 genomes]
rs58979833	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59707579	1.00[ASN][1000 genomes]
rs60835162	1.00[ASN][1000 genomes]
rs61185934	1.00[ASN][1000 genomes]
rs61730929	1.00[ASN][1000 genomes]
rs61730932	1.00[ASN][1000 genomes]
rs61995709	1.00[ASN][1000 genomes]
rs61997199	1.00[ASN][1000 genomes]
rs6471526	1.00[ASN][1000 genomes]
rs7004873	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532351	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532352	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532353	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266490	1.00[ASN][1000 genomes]
rs73268303	1.00[ASN][1000 genomes]
rs73268328	1.00[ASN][1000 genomes]
rs73695429	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695431	1.00[ASN][1000 genomes]
rs73695432	1.00[ASN][1000 genomes]
rs73695433	1.00[ASN][1000 genomes]
rs73695435	1.00[ASN][1000 genomes]
rs73695436	1.00[ASN][1000 genomes]
rs73695437	1.00[ASN][1000 genomes]
rs73695438	1.00[ASN][1000 genomes]
rs73695439	1.00[ASN][1000 genomes]
rs7814173	1.00[ASN][1000 genomes]
rs7815085	1.00[ASN][1000 genomes]
rs7841828	1.00[ASN][1000 genomes]
rs894149	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96282400-96285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96282800-96285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:96282800-96286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:96283000-96283800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:96283000-96285400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:96283000-96285600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:96283000-96285600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:96283000-96285600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:96283000-96286000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:96283200-96283800	Enhancers	Fetal Thymus	thymus
11	chr8:96283200-96284600	Weak transcription	Placenta	Placenta
12	chr8:96283200-96285800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:96283200-96286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:96283400-96283800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:96283400-96283800	Enhancers	Fetal Intestine Large	intestine
16	chr8:96283400-96283800	Enhancers	Dnd41	blood
17	chr8:96283400-96285000	Weak transcription	HepG2	liver
18	chr8:96283400-96285200	Weak transcription	Small Intestine	intestine
19	chr8:96283400-96285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:96283400-96286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:96283400-96286000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:96283600-96285400	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:96283600-96285600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:96283600-96285800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:96283600-96286000	Weak transcription	Fetal Heart	heart

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