Variant report

Variant	rs13252268
Chromosome Location	chr8:96262444-96262445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96144307..96149700-chr8:96258787..96262664,8	MCF-7	breast:
2	chr8:96124960..96126763-chr8:96260721..96264387,3	MCF-7	breast:
3	chr8:96261216..96262799-chr8:96264991..96267413,2	K562	blood:
4	chr8:96145046..96147483-chr8:96262186..96264321,3	MCF-7	breast:
5	chr8:96249665..96253673-chr8:96259430..96262765,4	K562	blood:
6	chr8:96260878..96262975-chr8:96277953..96279731,2	K562	blood:
7	chr8:96167676..96169648-chr8:96260449..96262617,2	MCF-7	breast:
8	chr8:96261077..96263105-chr8:96279082..96281612,2	K562	blood:
9	chr8:96036259..96038702-chr8:96260972..96263190,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253773	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000175895	Chromatin interaction
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13248616	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13250483	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13257305	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13267037	0.85[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13267333	0.85[CEU][hapmap]
rs13267612	0.85[CEU][hapmap]
rs13268060	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13272104	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13272361	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13276119	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13276926	0.85[CEU][hapmap]
rs13278690	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33970491	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34079000	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34202133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34961968	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35120548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35306808	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35363033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35432451	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35482239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71532354	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs894149	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
5	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
6	chr8:96249000-96280800	Weak transcription	Gastric	stomach
7	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
8	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
9	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
11	chr8:96252200-96263400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
13	chr8:96255000-96263400	Weak transcription	Brain Anterior Caudate	brain
14	chr8:96255200-96268600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
16	chr8:96256400-96263600	Weak transcription	Primary T cells from cord blood	blood
17	chr8:96256800-96280400	Weak transcription	Lung	lung
18	chr8:96257000-96271400	Weak transcription	A549	lung
19	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:96257400-96271000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:96257400-96271400	Weak transcription	Ovary	ovary
22	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:96257600-96263600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:96257800-96265400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
26	chr8:96258000-96270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:96258800-96271400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:96259400-96263600	Weak transcription	Liver	Liver
32	chr8:96260000-96263400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
34	chr8:96260400-96263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
38	chr8:96261200-96263600	Weak transcription	Brain Substantia Nigra	brain
39	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:96261800-96263600	Weak transcription	Brain Angular Gyrus	brain
42	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
43	chr8:96262000-96264400	Enhancers	K562	blood
44	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
46	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
47	chr8:96262400-96263400	Weak transcription	Primary B cells from cord blood	blood
48	chr8:96262400-96271000	Weak transcription	Primary B cells from peripheral blood	blood

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