Variant report
| Variant | rs13268060 |
|---|---|
| Chromosome Location | chr8:96289403-96289404 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253773 | Chromatin interaction |
| ENSG00000156172 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13248616 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13250483 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13252268 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13257305 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13272104 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13272361 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13276119 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13278690 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs33970491 | 0.94[AMR][1000 genomes] |
| rs34079000 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs34202133 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34961968 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35120548 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35306808 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35363033 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35432451 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35482239 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35543354 | 0.81[AMR][1000 genomes] |
| rs35559164 | 0.81[AMR][1000 genomes] |
| rs71532354 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023866 | chr8:96273255-96306378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
