Variant report

Variant	rs71532354
Chromosome Location	chr8:96285770-96285771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13248616	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13250483	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13252268	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13257305	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13268060	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13272104	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13272361	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13276119	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13278690	0.91[EUR][1000 genomes]
rs33970491	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34079000	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34202133	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34961968	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35120548	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35194027	0.80[EUR][1000 genomes]
rs35306808	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35363033	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35432451	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35482239	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96282800-96286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:96283000-96286000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:96283200-96285800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:96283200-96286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:96283400-96286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:96283400-96286000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:96283600-96285800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:96283600-96286000	Weak transcription	Fetal Heart	heart
9	chr8:96284600-96286800	Enhancers	Placenta	Placenta
10	chr8:96285000-96285800	Enhancers	HepG2	liver
11	chr8:96285400-96287000	Enhancers	Fetal Muscle Leg	muscle
12	chr8:96285600-96286200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:96285600-96286200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:96285600-96286200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:96285600-96286400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:96285600-96286400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:96285600-96286600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:96285600-96286800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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