Variant report

Variant	rs34079000
Chromosome Location	chr8:96273590-96273591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96271978..96274186-chr8:96280108..96281656,2	MCF-7	breast:
2	chr8:96097741..96100033-chr8:96272742..96274690,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13248616	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13250483	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13252268	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13257305	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13268060	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13271205	0.80[AMR][1000 genomes]
rs13272104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13272361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13276119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13278690	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs33970491	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34202133	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34961968	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35120548	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35306808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35363033	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35432451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35482239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71532354	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a
2	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
4	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
5	chr8:96249000-96280800	Weak transcription	Gastric	stomach
6	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
7	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
8	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
9	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
10	chr8:96256800-96280400	Weak transcription	Lung	lung
11	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
14	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
18	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
21	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
26	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
27	chr8:96262600-96280400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:96263200-96280400	Weak transcription	Placenta	Placenta
29	chr8:96264200-96276800	Weak transcription	Primary T cells from cord blood	blood
30	chr8:96264200-96280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:96264200-96280400	Weak transcription	Liver	Liver
32	chr8:96264200-96280400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:96264200-96280400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:96264400-96280000	Weak transcription	Brain Angular Gyrus	brain
35	chr8:96266000-96280400	Weak transcription	Fetal Intestine Small	intestine
36	chr8:96267000-96280400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr8:96268800-96276200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr8:96268800-96280400	Weak transcription	Thymus	Thymus
39	chr8:96269200-96280400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:96269400-96280600	Weak transcription	HSMMtube	muscle
41	chr8:96269600-96280400	Weak transcription	GM12878-XiMat	blood
42	chr8:96270800-96275400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:96271000-96280400	Weak transcription	Fetal Muscle Leg	muscle
44	chr8:96271800-96280400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:96271800-96280400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr8:96271800-96280400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr8:96272000-96280200	Weak transcription	A549	lung
48	chr8:96272000-96280400	Weak transcription	Fetal Brain Female	brain
49	chr8:96272000-96280600	Weak transcription	Aorta	Aorta
50	chr8:96272000-96280600	Weak transcription	Ovary	ovary

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