Variant report

Variant	rs35120548
Chromosome Location	chr8:96256667-96256668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96256620..96258806-chr8:96280344..96282393,2	MCF-7	breast:
2	chr8:96206515..96208115-chr8:96256638..96258375,2	MCF-7	breast:
3	chr8:96145784..96147714-chr8:96256412..96258560,3	MCF-7	breast:
4	chr8:96145890..96147663-chr8:96255297..96258154,2	K562	blood:
5	chr8:96249492..96251130-chr8:96256592..96259030,2	K562	blood:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13248616	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13250483	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13252268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13257305	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13267037	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13268060	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13272104	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13272361	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13276119	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13278690	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33970491	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34079000	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34202133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34961968	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35306808	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35363033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35432451	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35482239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71532354	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
5	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
6	chr8:96248400-96262200	Weak transcription	HepG2	liver
7	chr8:96249000-96280800	Weak transcription	Gastric	stomach
8	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
9	chr8:96250400-96261800	Weak transcription	Spleen	Spleen
10	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
11	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
13	chr8:96251400-96259800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:96251400-96260200	Weak transcription	Primary B cells from cord blood	blood
15	chr8:96251800-96258800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:96252200-96263400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
18	chr8:96254400-96261600	Weak transcription	Fetal Thymus	thymus
19	chr8:96254800-96259200	Weak transcription	HSMMtube	muscle
20	chr8:96255000-96263400	Weak transcription	Brain Anterior Caudate	brain
21	chr8:96255200-96268600	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
23	chr8:96255400-96258600	Weak transcription	Fetal Lung	lung
24	chr8:96256400-96263600	Weak transcription	Primary T cells from cord blood	blood
25	chr8:96256600-96258600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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