Variant report

Variant	rs357705
Chromosome Location	chr2:180655961-180655962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10167236	0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12693206	0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs13410494	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16866917	1.00[CHD][hapmap]
rs16866975	0.82[AFR][1000 genomes]
rs2367801	1.00[CHD][hapmap];0.85[YRI][hapmap]
rs357693	1.00[ASN][1000 genomes]
rs357696	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6433807	0.85[YRI][hapmap]
rs73973704	1.00[ASN][1000 genomes]
rs73973706	1.00[ASN][1000 genomes]
rs73973710	1.00[ASN][1000 genomes]
rs746971	1.00[ASN][1000 genomes]
rs908286	1.00[ASN][1000 genomes]
rs959954	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs992333	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180655000-180656000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180655600-180657800	Weak transcription	K562	blood
3	chr2:180655600-180669600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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