Variant report

Variant	rs2367801
Chromosome Location	chr2:180599126-180599127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10167236	1.00[ASN][1000 genomes]
rs12693206	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13410494	1.00[ASN][1000 genomes]
rs16866917	1.00[CHD][hapmap]
rs17774088	0.96[EUR][1000 genomes]
rs2171190	0.96[EUR][1000 genomes]
rs357693	1.00[ASN][1000 genomes]
rs357696	1.00[ASN][1000 genomes]
rs357705	1.00[CHD][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs4390734	0.96[EUR][1000 genomes]
rs4556941	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4558554	0.96[EUR][1000 genomes]
rs62180369	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180372	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180373	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62180377	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180379	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180380	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180381	0.96[EUR][1000 genomes]
rs62180382	0.91[EUR][1000 genomes]
rs62180383	0.96[EUR][1000 genomes]
rs62180384	0.96[EUR][1000 genomes]
rs62180385	0.96[EUR][1000 genomes]
rs62180386	0.93[EUR][1000 genomes]
rs62180387	0.96[EUR][1000 genomes]
rs62180388	0.96[EUR][1000 genomes]
rs62180389	0.96[EUR][1000 genomes]
rs62180390	0.96[EUR][1000 genomes]
rs62180391	0.91[EUR][1000 genomes]
rs62180393	0.93[EUR][1000 genomes]
rs62180408	0.91[EUR][1000 genomes]
rs62181522	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62181527	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6433807	1.00[YRI][hapmap]
rs73973704	1.00[ASN][1000 genomes]
rs73973706	1.00[ASN][1000 genomes]
rs73973710	1.00[ASN][1000 genomes]
rs746971	1.00[ASN][1000 genomes]
rs908286	1.00[ASN][1000 genomes]
rs959954	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs992333	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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