Variant report
| Variant | rs62180369 |
|---|---|
| Chromosome Location | chr2:180616485-180616486 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:179660873..179661497-chr2:180616030..180616590,2 | MCF-7 | breast: | |
| 2 | chr2:180286529..180287408-chr2:180615709..180616559,2 | K562 | blood: | |
| 3 | chr2:180275349..180276229-chr2:180615641..180616550,4 | MCF-7 | breast: | |
| 4 | chr2:180286493..180287715-chr2:180615528..180616540,6 | MCF-7 | breast: | |
| 5 | chr2:179660477..179661475-chr2:180615670..180616601,3 | K562 | blood: | |
| 6 | chr2:180286906..180287502-chr2:180615695..180616530,2 | MCF-7 | breast: | |
| 7 | chr2:180275386..180276286-chr2:180615603..180616556,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17774088 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2171190 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4390734 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4556941 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4558554 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180372 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180373 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62180377 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180379 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180380 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180381 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180382 | 0.96[EUR][1000 genomes] |
| rs62180383 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180384 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180385 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180386 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62180387 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180388 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180389 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180390 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62180391 | 0.96[EUR][1000 genomes] |
| rs62180393 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62180408 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62181522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62181527 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180610800-180621200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
