Variant report

Variant	rs62180393
Chromosome Location	chr2:180644717-180644718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17774088	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2171190	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4390734	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4556941	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4558554	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180369	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180372	0.98[EUR][1000 genomes]
rs62180373	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180377	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180379	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180380	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180381	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180382	0.93[EUR][1000 genomes]
rs62180383	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180384	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180385	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180386	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62180387	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180388	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180389	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180390	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180391	0.93[EUR][1000 genomes]
rs62180408	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62181522	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62181527	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180644200-180644800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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