Variant report
| Variant | rs62180408 |
|---|---|
| Chromosome Location | chr2:180658407-180658408 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:180656227..180658601-chr2:180661307..180663492,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17774088 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2171190 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4390734 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4556941 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4558554 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180369 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180372 | 0.95[EUR][1000 genomes] |
| rs62180373 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62180377 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180379 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180380 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180381 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180382 | 0.91[EUR][1000 genomes] |
| rs62180383 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180384 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180385 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180386 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62180387 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180388 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180389 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180390 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62180391 | 0.91[EUR][1000 genomes] |
| rs62180393 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62181522 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62181527 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180655600-180669600 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 2 | chr2:180658400-180659600 | ZNF genes & repeats | K562 | blood |
