Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17774088	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2171190	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4390734	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4556941	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4558554	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180372	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180373	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180377	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180379	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180381	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180382	0.94[EUR][1000 genomes]
rs62180383	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180384	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180385	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180386	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180387	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180388	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180389	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180390	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180391	0.94[EUR][1000 genomes]
rs62180393	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62180408	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62181527	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180608800-180613000	Enhancers	Fetal Lung	lung
2	chr2:180610800-180613800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180610800-180614000	Weak transcription	Right Atrium	heart
4	chr2:180610800-180614000	Weak transcription	HSMM	muscle
5	chr2:180610800-180621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:180611000-180613800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:180611200-180614000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180612000-180613600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:180612000-180614000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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