Variant report
| Variant | rs992333 |
|---|---|
| Chromosome Location | chr2:180597405-180597406 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10167236 | 1.00[ASN][1000 genomes] |
| rs12693206 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13410494 | 1.00[ASN][1000 genomes] |
| rs2367801 | 1.00[YRI][hapmap] |
| rs357693 | 1.00[ASN][1000 genomes] |
| rs357696 | 1.00[ASN][1000 genomes] |
| rs357705 | 0.85[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6433807 | 1.00[YRI][hapmap] |
| rs73973704 | 1.00[ASN][1000 genomes] |
| rs73973706 | 1.00[ASN][1000 genomes] |
| rs73973710 | 1.00[ASN][1000 genomes] |
| rs746971 | 1.00[ASN][1000 genomes] |
| rs908286 | 1.00[ASN][1000 genomes] |
| rs959954 | 0.85[YRI][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
