Variant report

Variant	rs35779256
Chromosome Location	chr11:93859631-93859632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:93858965-93866117	IMR90	lung:	n/a	chr11:93863307-93863316

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93844146..93845919-chr11:93859116..93861491,2	K562	blood:
2	chr11:93840966..93842950-chr11:93859232..93861067,2	K562	blood:

Variant related genes	Relation type
PANX1	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10437575	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1138800	0.80[AMR][1000 genomes]
rs12222234	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2949856	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2949857	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2949858	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2949863	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3020011	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4269880	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4271349	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4342990	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4396251	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4463817	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531426	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4590832	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4625415	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753535	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753536	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753537	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4753538	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6483290	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7108501	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119039	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119866	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124402	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7925817	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926331	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927016	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942162	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942313	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9734022	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv523082	chr11:93834223-93866147	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35779256	HEPHL1	cis	Thyroid	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93843400-93860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:93852000-93860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:93854600-93860800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93854600-93861000	Weak transcription	NH-A	brain
5	chr11:93855000-93860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:93857800-93861000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:93858400-93861200	Weak transcription	Right Atrium	heart
8	chr11:93858800-93860200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:93859200-93859800	Enhancers	NHDF-Ad	bronchial
10	chr11:93859200-93860400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:93859200-93860600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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