Variant report

Variant	rs4753536
Chromosome Location	chr11:93849367-93849368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93837870..93840032-chr11:93846900..93849669,2	MCF-7	breast:
2	chr11:93844204..93845981-chr11:93847595..93849691,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10437575	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12222234	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2949856	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2949857	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2949858	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2949863	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3020011	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35779256	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4269880	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4271349	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4342990	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4396251	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4463817	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531426	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590832	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4625415	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753535	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753537	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753538	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6483290	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7108501	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119039	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119866	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124402	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925817	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926331	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927016	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942162	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942313	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9734022	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv523082	chr11:93834223-93866147	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4753536	HEPHL1	cis	Thyroid	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93843400-93860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:93845200-93850000	Weak transcription	Aorta	Aorta
3	chr11:93846400-93849400	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:93846600-93849400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:93846600-93849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:93846800-93849400	Weak transcription	NHEK	skin
7	chr11:93847400-93851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:93847400-93853600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:93847800-93852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:93848200-93852200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:93848400-93849600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:93849000-93850200	Enhancers	Pancreas	Pancrea
13	chr11:93849000-93850600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:93849000-93851000	Enhancers	Liver	Liver
15	chr11:93849000-93851200	Enhancers	HMEC	breast
16	chr11:93849200-93849800	Weak transcription	Ovary	ovary
17	chr11:93849200-93850000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:93849200-93850000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:93849200-93850200	Enhancers	HepG2	liver
20	chr11:93849200-93851200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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