Variant report

Variant	rs35813262
Chromosome Location	chr5:71039298-71039299
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:71034748..71037206-chr5:71038375..71039948,2	MCF-7	breast:
2	chr5:71038706..71040392-chr5:71041876..71044147,2	K562	blood:
3	chr5:71030732..71032506-chr5:71037774..71040641,2	MCF-7	breast:
4	chr5:71038804..71040389-chr5:71041896..71043953,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10052158	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054756	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10056139	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10057071	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10057073	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058916	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10058929	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10059173	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10059673	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10059730	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10062346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10062414	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10062798	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063036	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063485	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10063597	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064830	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10064832	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10065308	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10067232	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067827	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10068935	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10074584	0.84[EUR][1000 genomes]
rs1010844	0.84[EUR][1000 genomes]
rs10474439	0.84[EUR][1000 genomes]
rs12108688	0.94[EUR][1000 genomes]
rs13162352	0.83[EUR][1000 genomes]
rs13184501	0.83[AMR][1000 genomes]
rs13355437	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16871995	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16876022	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28707100	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28892897	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34009167	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34643564	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35907685	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3846660	0.84[EUR][1000 genomes]
rs3857385	0.83[EUR][1000 genomes]
rs3915457	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41476149	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4235685	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4235686	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4351125	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4583865	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4704225	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66700670	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67741541	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6867989	0.84[EUR][1000 genomes]
rs6888179	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897144	0.84[EUR][1000 genomes]
rs73117897	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117898	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117899	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707837	0.83[EUR][1000 genomes]
rs7715263	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7731217	0.83[EUR][1000 genomes]
rs9293660	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9293661	0.86[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71037800-71040800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr5:71038400-71040000	Enhancers	Fetal Lung	lung
3	chr5:71039000-71039600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:71039000-71039600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr5:71039000-71039600	Enhancers	Rectal Smooth Muscle	rectum
6	chr5:71039000-71040000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr5:71039000-71040400	Enhancers	Fetal Intestine Small	intestine
8	chr5:71039000-71040400	Enhancers	Lung	lung
9	chr5:71039000-71040600	Enhancers	Small Intestine	intestine
10	chr5:71039000-71040600	Enhancers	Stomach Mucosa	stomach
11	chr5:71039000-71040800	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:71039000-71040800	Enhancers	HepG2	liver
13	chr5:71039200-71039600	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr5:71039200-71040200	Enhancers	Fetal Stomach	stomach
15	chr5:71039200-71040400	Enhancers	Gastric	stomach
16	chr5:71039200-71040400	Enhancers	Ovary	ovary
17	chr5:71039200-71040400	Enhancers	Stomach Smooth Muscle	stomach

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