Variant report

Variant	rs10058916
Chromosome Location	chr5:71042098-71042099
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:71038706..71040392-chr5:71041876..71044147,2	K562	blood:
2	chr5:71040996..71045955-chr5:71047469..71049990,6	MCF-7	breast:
3	chr5:71038804..71040389-chr5:71041896..71043953,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10052158	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054756	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10056139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10057071	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10057073	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058929	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059173	0.92[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10059673	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10059730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10062346	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10062414	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10062798	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063036	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063485	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10063597	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064830	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10064832	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10065308	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10067232	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067827	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10068935	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10074584	0.83[EUR][1000 genomes]
rs1010844	0.83[EUR][1000 genomes]
rs10474439	0.83[EUR][1000 genomes]
rs12108688	0.93[EUR][1000 genomes]
rs13162352	0.82[EUR][1000 genomes]
rs13355437	0.93[EUR][1000 genomes]
rs16871995	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16876022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28707100	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28892897	0.93[EUR][1000 genomes]
rs34009167	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34643564	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35813262	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35907685	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846660	0.83[EUR][1000 genomes]
rs3857385	0.83[EUR][1000 genomes]
rs3915457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41476149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4235685	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4235686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4351125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4583865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4704225	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66700670	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67741541	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6867989	0.83[EUR][1000 genomes]
rs6888179	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6895325	0.86[CHB][hapmap]
rs6897144	0.83[EUR][1000 genomes]
rs73117897	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117898	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117899	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707837	0.83[EUR][1000 genomes]
rs7715263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7731217	0.83[EUR][1000 genomes]
rs9293660	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9293661	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71040400-71044200	Weak transcription	Gastric	stomach
2	chr5:71040400-71044200	Weak transcription	Pancreas	Pancrea
3	chr5:71040400-71044400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:71040400-71053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:71040600-71044000	Weak transcription	Stomach Mucosa	stomach
6	chr5:71040600-71044400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:71040800-71044000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:71040800-71044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:71041200-71044000	Weak transcription	Rectal Mucosa Donor 31	rectum

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