Variant report

Variant	rs9293661
Chromosome Location	chr5:71063206-71063207
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:70750157..70752984-chr5:71060951..71063253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145734	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10052158	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10054756	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10056139	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10057071	0.87[EUR][1000 genomes]
rs10057073	0.87[EUR][1000 genomes]
rs10058916	0.87[EUR][1000 genomes]
rs10058929	0.87[EUR][1000 genomes]
rs10059173	0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10059673	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10059730	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10062346	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10062414	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10062798	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10063036	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10063485	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10063597	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10064830	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10064832	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10065308	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10067232	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10067827	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10068935	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12108688	0.80[EUR][1000 genomes]
rs13355437	0.80[EUR][1000 genomes]
rs16871995	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16876022	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28707100	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28892897	0.80[EUR][1000 genomes]
rs34009167	0.85[ASN][1000 genomes]
rs34643564	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35813262	0.86[EUR][1000 genomes]
rs35907685	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3915457	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41476149	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235685	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4235686	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4351125	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4583865	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4704225	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66700670	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67741541	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6888179	0.87[EUR][1000 genomes]
rs73117897	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73117898	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73117899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7715263	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9293660	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830341	chr5:71057105-71221422	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71061600-71064000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:71061600-71065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:71061800-71065000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:71062800-71063800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:71062800-71064000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:71063200-71063400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
7	chr5:71063200-71063400	Bivalent Enhancer	Osteobl	bone
8	chr5:71063200-71064000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:71063200-71064000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr5:71063200-71065000	Enhancers	HUVEC	blood vessel

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