Variant report

Variant	rs12108688
Chromosome Location	chr5:71035648-71035649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:71034748..71037206-chr5:71038375..71039948,2	MCF-7	breast:
2	chr5:71029826..71032635-chr5:71032943..71035755,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10052158	0.89[EUR][1000 genomes]
rs10054756	0.91[EUR][1000 genomes]
rs10056139	0.89[CHB][hapmap];0.93[EUR][1000 genomes]
rs10057071	0.93[EUR][1000 genomes]
rs10057073	0.93[EUR][1000 genomes]
rs10058916	0.93[EUR][1000 genomes]
rs10058929	0.93[EUR][1000 genomes]
rs10059173	0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs10059673	0.89[EUR][1000 genomes]
rs10059730	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs10062346	0.89[EUR][1000 genomes]
rs10062414	0.89[EUR][1000 genomes]
rs10062798	0.89[EUR][1000 genomes]
rs10063036	0.89[EUR][1000 genomes]
rs10063485	0.91[EUR][1000 genomes]
rs10063597	0.91[EUR][1000 genomes]
rs10064830	0.90[EUR][1000 genomes]
rs10064832	0.90[EUR][1000 genomes]
rs10065308	0.91[EUR][1000 genomes]
rs10067232	0.89[EUR][1000 genomes]
rs10067827	0.90[EUR][1000 genomes]
rs10068935	0.89[EUR][1000 genomes]
rs10074584	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1010844	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474439	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13162352	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13355437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871995	0.81[CEU][hapmap];0.92[CHB][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs16876022	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs28707100	0.91[EUR][1000 genomes]
rs28892897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34643564	0.88[EUR][1000 genomes]
rs35813262	0.94[EUR][1000 genomes]
rs35907685	0.88[EUR][1000 genomes]
rs3846660	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3857385	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3915457	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs41476149	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs4235685	0.88[EUR][1000 genomes]
rs4235686	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs4351125	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs4583865	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs4704225	0.89[EUR][1000 genomes]
rs66700670	0.91[EUR][1000 genomes]
rs67741541	0.90[EUR][1000 genomes]
rs6867989	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6888179	0.93[EUR][1000 genomes]
rs6895325	0.86[CHB][hapmap]
rs6897144	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73117897	0.89[EUR][1000 genomes]
rs73117898	0.89[EUR][1000 genomes]
rs73117899	0.89[EUR][1000 genomes]
rs7707837	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715263	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs7731217	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9293660	0.81[CEU][hapmap];0.92[CHB][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs9293661	0.80[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71034800-71037800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:71035000-71036200	Enhancers	GM12878-XiMat	blood

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