Variant report

Variant	rs35860067
Chromosome Location	chr19:21583118-21583119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21578989..21580670-chr19:21582551..21584236,2	K562	blood:
2	chr19:21581402..21583289-chr19:21587139..21589283,2	K562	blood:

Variant related genes	Relation type
ENSG00000196268	Chromatin interaction
ENSG00000269237	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11671832	0.82[ASN][1000 genomes]
rs11673406	0.80[EUR][1000 genomes]
rs12150996	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12151067	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12151068	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12151222	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12971724	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12975981	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12981869	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12984238	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1678822	0.82[ASN][1000 genomes]
rs17618715	1.00[ASN][1000 genomes]
rs17618778	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1762580	1.00[ASN][1000 genomes]
rs17680671	0.89[ASN][1000 genomes]
rs1827225	0.86[ASN][1000 genomes]
rs2650810	0.81[EUR][1000 genomes]
rs2650845	0.83[EUR][1000 genomes]
rs2650847	0.82[EUR][1000 genomes]
rs28839521	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28875571	0.81[AMR][1000 genomes]
rs2914629	0.80[EUR][1000 genomes]
rs2914636	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2914637	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2914647	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2928210	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34560125	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34875588	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35148123	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35578515	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4341872	0.82[EUR][1000 genomes]
rs4461198	0.82[EUR][1000 genomes]
rs483383	1.00[ASN][1000 genomes]
rs501647	1.00[ASN][1000 genomes]
rs509540	1.00[ASN][1000 genomes]
rs514390	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs549882	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs552039	1.00[ASN][1000 genomes]
rs56152627	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs566230	1.00[ASN][1000 genomes]
rs57055133	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57841525	0.85[EUR][1000 genomes]
rs58121117	1.00[ASN][1000 genomes]
rs59617671	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs608002	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62107470	1.00[ASN][1000 genomes]
rs62107538	1.00[ASN][1000 genomes]
rs62109224	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62110379	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62111469	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62111470	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62111476	0.84[EUR][1000 genomes]
rs635730	0.93[ASN][1000 genomes]
rs6511247	0.86[EUR][1000 genomes]
rs670813	1.00[ASN][1000 genomes]
rs67723811	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs685844	1.00[ASN][1000 genomes]
rs7245848	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7246684	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7248700	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7254762	0.89[ASN][1000 genomes]
rs7258211	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7259178	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025767	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8099863	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8101077	0.86[EUR][1000 genomes]
rs8102655	0.84[EUR][1000 genomes]
rs8103151	0.86[EUR][1000 genomes]
rs8103411	0.85[ASN][1000 genomes]
rs8103417	0.95[ASN][1000 genomes]
rs8105404	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105629	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8107940	0.84[EUR][1000 genomes]
rs8110470	0.87[ASN][1000 genomes]
rs8111189	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8113558	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1793996	chr19:21544242-21609607	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1801985	chr19:21544242-21609607	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1844586	chr19:21544242-21609607	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1834499	chr19:21557835-21609607	Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv1834993	chr19:21557835-21609607	Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv911421	chr19:21579718-21613397	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
15	nsv978789	chr19:21579953-21589286	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs35860067	ZNF738	Cis_1M	lymphoblastoid	RTeQTL
rs35860067	ZNF429	cis	Whole Blood	GTEx
rs35860067	ZNF738	cis	Adipose Subcutaneous	GTEx
rs35860067	ZNF429	cis	Artery Aorta	GTEx
rs35860067	ZNF738	cis	Thyroid	GTEx
rs35860067	ZNF738	cis	Esophagus Muscularis	GTEx
rs35860067	ZNF493	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21580600-21585000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:21580600-21592600	Weak transcription	Placenta	Placenta
3	chr19:21580600-21593200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:21580600-21593600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:21580600-21600200	Weak transcription	Gastric	stomach
6	chr19:21580600-21602400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:21580800-21595400	Weak transcription	HUVEC	blood vessel
8	chr19:21581000-21583400	Weak transcription	Brain Substantia Nigra	brain
9	chr19:21581000-21583400	Weak transcription	NHDF-Ad	bronchial
10	chr19:21581000-21584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:21581000-21591800	Weak transcription	Pancreas	Pancrea
12	chr19:21581000-21596200	Weak transcription	Aorta	Aorta
13	chr19:21581000-21598800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:21581200-21583400	Weak transcription	Fetal Thymus	thymus
15	chr19:21581200-21584200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr19:21581200-21584200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr19:21581200-21590200	Weak transcription	NHLF	lung
18	chr19:21581400-21583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr19:21581400-21583200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr19:21581400-21583400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:21581400-21583400	Weak transcription	NHEK	skin
22	chr19:21581400-21583800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr19:21581400-21584200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:21581400-21584200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr19:21581400-21585200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr19:21581400-21585400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr19:21581400-21585400	Weak transcription	Colonic Mucosa	Colon
28	chr19:21581400-21586200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr19:21581400-21588400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:21581400-21588600	Weak transcription	Fetal Stomach	stomach
31	chr19:21581400-21589000	Weak transcription	K562	blood
32	chr19:21581400-21592000	Weak transcription	NH-A	brain
33	chr19:21581400-21594600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr19:21581400-21596800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr19:21581400-21598800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:21581600-21583200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr19:21581600-21583200	Weak transcription	Brain Anterior Caudate	brain
38	chr19:21581600-21583200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr19:21581600-21583400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr19:21581600-21583400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr19:21581600-21583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr19:21581600-21583400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr19:21581600-21583400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr19:21581600-21583400	Strong transcription	Brain Germinal Matrix	brain
45	chr19:21581600-21583400	Weak transcription	Colon Smooth Muscle	Colon
46	chr19:21581600-21583400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr19:21581600-21583400	Weak transcription	Lung	lung
48	chr19:21581600-21583400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:21581600-21583400	Weak transcription	HSMMtube	muscle
50	chr19:21581600-21584000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links