Variant report

Variant	rs358702
Chromosome Location	chr3:155542475-155542476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155533251..155536091-chr3:155541941..155544518,2	K562	blood:
2	chr3:155540455..155542624-chr3:155586711..155588884,2	K562	blood:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11921267	0.88[EUR][1000 genomes]
rs11927551	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1516500	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs171448	0.88[EUR][1000 genomes]
rs382534	0.83[GIH][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs389761	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs390677	0.88[EUR][1000 genomes]
rs407258	0.83[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs422497	0.88[EUR][1000 genomes]
rs439765	0.88[EUR][1000 genomes]
rs452874	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs503139	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs538514	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62286778	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441017	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6787781	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6794232	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7616853	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7636224	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7637645	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7638685	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7649631	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837201	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842017	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155542800	Weak transcription	Left Ventricle	heart
2	chr3:155524400-155543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
4	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:155524400-155567400	Weak transcription	Lung	lung
6	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
10	chr3:155526000-155543000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:155527400-155543200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:155527600-155544200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:155527600-155544400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:155530400-155542800	Weak transcription	Liver	Liver
15	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
16	chr3:155533200-155561800	Weak transcription	Gastric	stomach
17	chr3:155533400-155544400	Weak transcription	K562	blood
18	chr3:155533400-155565800	Weak transcription	HepG2	liver
19	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
20	chr3:155534000-155547200	Weak transcription	GM12878-XiMat	blood
21	chr3:155534400-155543600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:155535000-155542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
24	chr3:155535200-155542800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:155535200-155544400	Weak transcription	NH-A	brain
26	chr3:155535200-155546800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:155535200-155551200	Weak transcription	NHEK	skin
28	chr3:155535400-155568800	Weak transcription	Osteobl	bone
29	chr3:155535600-155543000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:155535600-155568000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:155535800-155542800	Weak transcription	Fetal Stomach	stomach
32	chr3:155536000-155543000	Weak transcription	Fetal Intestine Small	intestine
33	chr3:155536000-155546400	Weak transcription	Thymus	Thymus
34	chr3:155536200-155546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:155536800-155568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:155537000-155547000	Weak transcription	Dnd41	blood
37	chr3:155537200-155565600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:155537400-155543000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:155537400-155546200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:155537400-155564000	Weak transcription	Fetal Brain Female	brain
41	chr3:155537800-155542800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:155538600-155558800	Weak transcription	Pancreas	Pancrea
43	chr3:155539200-155542800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:155539200-155544400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:155539200-155555400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:155539600-155544400	Weak transcription	Primary B cells from cord blood	blood
47	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:155540200-155568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:155541000-155542800	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:155541000-155552000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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