Variant report

Variant	rs7616853
Chromosome Location	chr3:155567419-155567420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155563365..155564979-chr3:155565910..155569268,3	K562	blood:
2	chr3:155563365..155564970-chr3:155565910..155568625,2	K562	blood:
3	chr3:155524099..155526443-chr3:155566275..155568859,2	K562	blood:
4	chr3:155564204..155569110-chr3:155569153..155573660,11	K562	blood:
5	chr3:155558812..155562150-chr3:155562255..155568620,8	K562	blood:

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000174928	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11921267	0.86[EUR][1000 genomes]
rs11927551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171448	0.86[EUR][1000 genomes]
rs358702	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs382534	0.86[EUR][1000 genomes]
rs389761	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs390677	0.87[EUR][1000 genomes]
rs407258	0.88[EUR][1000 genomes]
rs422497	0.87[EUR][1000 genomes]
rs439765	0.85[EUR][1000 genomes]
rs452874	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs503139	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs538514	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286778	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441019	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6787781	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6794232	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7636224	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7637645	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638685	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7649631	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9837201	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9842017	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
3	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
4	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
6	chr3:155535400-155568800	Weak transcription	Osteobl	bone
7	chr3:155535600-155568000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:155536800-155568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:155540200-155568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:155541000-155568000	Weak transcription	Psoas Muscle	Psoas
12	chr3:155541600-155567800	Weak transcription	Colonic Mucosa	Colon
13	chr3:155542800-155569600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:155543000-155569400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:155543000-155569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:155543000-155569400	Weak transcription	NHLF	lung
17	chr3:155543000-155570200	Weak transcription	Esophagus	oesophagus
18	chr3:155543200-155569400	Weak transcription	A549	lung
19	chr3:155544200-155569000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:155545600-155568000	Weak transcription	Fetal Kidney	kidney
21	chr3:155547800-155568000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:155547800-155569000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:155547800-155569400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:155547800-155569600	Weak transcription	HSMMtube	muscle
25	chr3:155551800-155568200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:155551800-155568200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:155551800-155569600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:155552000-155568000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:155552000-155569400	Weak transcription	HSMM	muscle
30	chr3:155552000-155569600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:155552800-155569000	Weak transcription	Primary B cells from cord blood	blood
32	chr3:155553400-155568000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:155553800-155568000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:155554000-155568200	Weak transcription	NH-A	brain
35	chr3:155554800-155568000	Weak transcription	Fetal Lung	lung
36	chr3:155557600-155569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:155559000-155569000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:155559200-155568000	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:155560600-155569600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr3:155561600-155569600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:155562200-155570400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:155562600-155569400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:155562800-155569400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:155563000-155570400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr3:155563200-155568000	Weak transcription	Left Ventricle	heart
46	chr3:155563600-155568000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:155563800-155567600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:155564000-155568000	Weak transcription	Brain Angular Gyrus	brain
49	chr3:155564200-155568000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:155564200-155568000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links