Variant report

Variant	rs6787781
Chromosome Location	chr3:155535351-155535352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155533251..155536091-chr3:155541941..155544518,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11921267	0.88[EUR][1000 genomes]
rs11927551	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171448	0.88[EUR][1000 genomes]
rs358702	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs382534	0.88[EUR][1000 genomes]
rs389761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs390677	0.87[EUR][1000 genomes]
rs407258	0.85[EUR][1000 genomes]
rs422497	0.87[EUR][1000 genomes]
rs439765	0.88[EUR][1000 genomes]
rs452874	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs503139	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286778	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441017	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6441019	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6794232	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7616853	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7636224	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7637645	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638685	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7649631	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837201	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9842017	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155542800	Weak transcription	Left Ventricle	heart
2	chr3:155524400-155543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
4	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:155524400-155567400	Weak transcription	Lung	lung
6	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
10	chr3:155526000-155543000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:155527400-155543200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:155527600-155544200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:155527600-155544400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:155530400-155542800	Weak transcription	Liver	Liver
15	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
16	chr3:155533200-155561800	Weak transcription	Gastric	stomach
17	chr3:155533400-155544400	Weak transcription	K562	blood
18	chr3:155533400-155565800	Weak transcription	HepG2	liver
19	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
20	chr3:155534000-155547200	Weak transcription	GM12878-XiMat	blood
21	chr3:155534400-155543600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:155535000-155542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
24	chr3:155535200-155542800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:155535200-155544400	Weak transcription	NH-A	brain
26	chr3:155535200-155546800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:155535200-155551200	Weak transcription	NHEK	skin

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