Variant report

Variant	rs35899944
Chromosome Location	chr3:136229057-136229058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12695649	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062352	1.00[ASN][1000 genomes]
rs13066401	1.00[ASN][1000 genomes]
rs13071220	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092193	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096466	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100192	1.00[ASN][1000 genomes]
rs13316214	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321721	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326151	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433688	1.00[ASN][1000 genomes]
rs13434116	1.00[ASN][1000 genomes]
rs1604793	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298525	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364492	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28390205	1.00[ASN][1000 genomes]
rs28472992	1.00[ASN][1000 genomes]
rs28634226	1.00[ASN][1000 genomes]
rs28641809	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718456	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28750366	1.00[ASN][1000 genomes]
rs28811905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28877020	1.00[ASN][1000 genomes]
rs34031772	1.00[ASN][1000 genomes]
rs34135127	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168675	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34282798	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34428695	1.00[ASN][1000 genomes]
rs34757183	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804893	1.00[ASN][1000 genomes]
rs34913797	1.00[ASN][1000 genomes]
rs34969907	1.00[ASN][1000 genomes]
rs35100027	1.00[ASN][1000 genomes]
rs35326900	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35428413	1.00[ASN][1000 genomes]
rs35522825	1.00[ASN][1000 genomes]
rs4038586	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66890203	1.00[ASN][1000 genomes]
rs67145204	1.00[ASN][1000 genomes]
rs67382287	1.00[ASN][1000 genomes]
rs6767889	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6768743	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771002	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773949	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774964	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775314	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67949818	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806123	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71336069	1.00[ASN][1000 genomes]
rs73230043	1.00[ASN][1000 genomes]
rs7612425	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809269	1.00[ASN][1000 genomes]
rs9810789	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812579	1.00[ASN][1000 genomes]
rs9813115	1.00[ASN][1000 genomes]
rs9813691	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818056	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818536	1.00[ASN][1000 genomes]
rs9820717	1.00[ASN][1000 genomes]
rs9823373	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828088	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837158	1.00[ASN][1000 genomes]
rs9838884	1.00[ASN][1000 genomes]
rs9839137	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9841529	1.00[ASN][1000 genomes]
rs9847427	1.00[ASN][1000 genomes]
rs9857833	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9857966	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866840	1.00[ASN][1000 genomes]
rs9869630	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870825	1.00[ASN][1000 genomes]
rs9875770	1.00[ASN][1000 genomes]
rs9878078	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881831	1.00[ASN][1000 genomes]
rs9883189	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv877527	chr3:136182053-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv877528	chr3:136209550-136295283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv591850	chr3:136209550-136300732	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136176600-136231800	Weak transcription	Psoas Muscle	Psoas
3	chr3:136176600-136240000	Weak transcription	HMEC	breast
4	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
6	chr3:136177200-136236400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:136191400-136268000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:136192400-136252400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:136193800-136231400	Weak transcription	NHLF	lung
10	chr3:136193800-136239200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:136195200-136231000	Weak transcription	Osteobl	bone
12	chr3:136195400-136231400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:136195400-136232000	Weak transcription	Right Ventricle	heart
14	chr3:136195400-136241800	Weak transcription	NH-A	brain
15	chr3:136195400-136250400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:136195400-136278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:136208400-136230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:136210800-136229600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:136211600-136232000	Weak transcription	Fetal Kidney	kidney
20	chr3:136212200-136229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:136212400-136231000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:136212400-136232000	Weak transcription	Aorta	Aorta
24	chr3:136212400-136241600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:136212400-136249600	Weak transcription	Lung	lung
26	chr3:136212600-136248200	Weak transcription	Esophagus	oesophagus
27	chr3:136213000-136231000	Weak transcription	Ovary	ovary
28	chr3:136213000-136239000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:136213000-136251000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr3:136213000-136252200	Weak transcription	Left Ventricle	heart
31	chr3:136213000-136326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:136213200-136246000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:136213200-136246600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:136213400-136231000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:136214000-136239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:136214000-136246200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:136214400-136238400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:136214600-136231000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:136215000-136230000	Weak transcription	Fetal Lung	lung
40	chr3:136215600-136246200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr3:136218400-136235000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:136218600-136235600	Weak transcription	HUVEC	blood vessel
43	chr3:136219800-136231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:136220600-136231200	Weak transcription	Adipose Nuclei	Adipose
45	chr3:136220600-136240000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:136220600-136242800	Weak transcription	GM12878-XiMat	blood
47	chr3:136220600-136266200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:136221000-136246400	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:136221200-136236800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:136221200-136241200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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