The 2.0 version of rSNPBase

Variant report

Variant rs28877020
Chromosome Location chr3:136395716-136395717
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:136365000-136396400 Weak transcription Gastric stomach
2 chr3:136381800-136410800 Weak transcription Psoas Muscle Psoas
3 chr3:136383600-136395800 Weak transcription Colon Smooth Muscle Colon
4 chr3:136385200-136398400 Weak transcription Fetal Intestine Large intestine
5 chr3:136386400-136412800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:136387000-136396400 Weak transcription Esophagus oesophagus
7 chr3:136387200-136412400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr3:136387800-136397800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:136390200-136413000 Weak transcription Pancreas Pancrea
10 chr3:136390600-136396400 Weak transcription Right Atrium heart
11 chr3:136390600-136397400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr3:136390600-136412000 Weak transcription Thymus Thymus
13 chr3:136390800-136397400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr3:136390800-136399800 Weak transcription Fetal Intestine Small intestine
15 chr3:136390800-136407200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr3:136390800-136447800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr3:136391000-136396000 Weak transcription Rectal Smooth Muscle rectum
18 chr3:136391200-136397200 Weak transcription Dnd41 blood
19 chr3:136391400-136396600 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr3:136391600-136396600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
21 chr3:136393200-136396600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr3:136393800-136408400 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr3:136394200-136409800 Weak transcription Primary hematopoietic stem cells blood
24 chr3:136395000-136396200 Weak transcription Brain Anterior Caudate brain
25 chr3:136395000-136398600 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr3:136395000-136404800 Weak transcription Fetal Heart heart
27 chr3:136395000-136407600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr3:136395000-136410200 Weak transcription Small Intestine intestine
29 chr3:136395000-136418200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr3:136395200-136396000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr3:136395400-136396000 Enhancers Muscle Satellite Cultured Cells --
32 chr3:136395400-136396000 Enhancers Left Ventricle heart
33 chr3:136395400-136396600 Enhancers Fetal Adrenal Gland Adrenal Gland
34 chr3:136395400-136407600 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr3:136395600-136395800 Enhancers Ovary ovary
36 chr3:136395600-136396400 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015