Variant report

Variant	rs9873536
Chromosome Location	chr3:136474267-136474268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:136474108-136474358	HepG2	liver:	n/a	n/a
2	WRNIP1	chr3:136474149-136474285	GM12878	blood:	n/a	n/a
3	CTCF	chr3:136474260-136474410	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:136466613..136474326-chr3:136579481..136583133,10	K562	blood:
2	chr3:136309415..136311669-chr3:136473283..136476207,2	K562	blood:
3	chr3:136472151..136474742-chr3:136749777..136751390,2	K562	blood:
4	chr3:136468701..136475672-chr3:136535815..136540749,9	K562	blood:
5	chr3:136472622..136474527-chr3:136477300..136478827,2	K562	blood:
6	chr3:136469311..136474326-chr3:136579207..136583133,7	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM22-1	chr3:136471472-136474622	ENSG00000261758.1

No data

Variant related genes	Relation type
STAG1	TF binding region
ENSG00000158092	Chromatin interaction
ENSG00000168917	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1052620	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695649	1.00[ASN][1000 genomes]
rs13062352	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066401	1.00[ASN][1000 genomes]
rs13071220	1.00[ASN][1000 genomes]
rs13080786	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092193	1.00[ASN][1000 genomes]
rs13096466	1.00[ASN][1000 genomes]
rs13100192	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314357	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326151	1.00[ASN][1000 genomes]
rs13433683	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433688	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434116	1.00[ASN][1000 genomes]
rs17365792	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872239	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176269	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370972	1.00[ASN][1000 genomes]
rs28390205	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28472992	1.00[ASN][1000 genomes]
rs28489326	1.00[ASN][1000 genomes]
rs28641809	1.00[ASN][1000 genomes]
rs28750366	1.00[ASN][1000 genomes]
rs28811905	1.00[ASN][1000 genomes]
rs28877020	1.00[ASN][1000 genomes]
rs34564818	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34645606	1.00[ASN][1000 genomes]
rs34804893	1.00[ASN][1000 genomes]
rs34969907	1.00[ASN][1000 genomes]
rs35096613	1.00[ASN][1000 genomes]
rs35100027	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35198484	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35210994	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35422852	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35428413	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36109616	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36177165	0.95[EUR][1000 genomes]
rs4038586	1.00[ASN][1000 genomes]
rs4470449	1.00[ASN][1000 genomes]
rs66509730	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67145204	1.00[ASN][1000 genomes]
rs67382287	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767889	1.00[ASN][1000 genomes]
rs6771002	1.00[ASN][1000 genomes]
rs6773949	1.00[ASN][1000 genomes]
rs6774964	1.00[ASN][1000 genomes]
rs6806123	1.00[ASN][1000 genomes]
rs71336069	1.00[ASN][1000 genomes]
rs71336080	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230043	1.00[ASN][1000 genomes]
rs73230099	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73231903	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612425	1.00[ASN][1000 genomes]
rs9289513	0.95[EUR][1000 genomes]
rs9809269	1.00[ASN][1000 genomes]
rs9809988	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813376	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813691	1.00[ASN][1000 genomes]
rs9819856	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820717	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828088	1.00[ASN][1000 genomes]
rs9828976	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838884	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840500	1.00[ASN][1000 genomes]
rs9845862	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847427	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850364	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857833	1.00[ASN][1000 genomes]
rs9857966	1.00[ASN][1000 genomes]
rs9858560	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860879	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865995	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867325	1.00[ASN][1000 genomes]
rs9869630	1.00[ASN][1000 genomes]
rs9871184	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875770	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878078	1.00[ASN][1000 genomes]
rs9879531	1.00[ASN][1000 genomes]
rs9881831	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883189	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136473000-136474400	Enhancers	GM12878-XiMat	blood
2	chr3:136473000-136476600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:136473000-136476800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:136473000-136476800	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:136473000-136477200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:136473200-136476600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:136473200-136476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:136473200-136477200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:136473400-136475600	Weak transcription	NHEK	skin
10	chr3:136473600-136476400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:136473600-136476800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:136473600-136477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:136473600-136477000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:136474200-136474400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:136474200-136474400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:136474200-136474400	Enhancers	Esophagus	oesophagus
17	chr3:136474200-136474400	Enhancers	Left Ventricle	heart
18	chr3:136474200-136474400	Enhancers	Pancreas	Pancrea

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