Variant report

Variant	rs13080786
Chromosome Location	chr3:136543708-136543709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1052620	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062352	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066401	1.00[ASN][1000 genomes]
rs13071220	1.00[ASN][1000 genomes]
rs13100192	1.00[ASN][1000 genomes]
rs13314357	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433683	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433688	1.00[ASN][1000 genomes]
rs13434116	1.00[ASN][1000 genomes]
rs17365792	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872239	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176269	1.00[ASN][1000 genomes]
rs28370972	1.00[ASN][1000 genomes]
rs28390205	1.00[ASN][1000 genomes]
rs28472992	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489326	1.00[ASN][1000 genomes]
rs28750366	1.00[ASN][1000 genomes]
rs28877020	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34564818	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34645606	1.00[ASN][1000 genomes]
rs34804893	1.00[ASN][1000 genomes]
rs35096613	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100027	1.00[ASN][1000 genomes]
rs35198484	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35210994	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35422852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35428413	1.00[ASN][1000 genomes]
rs35880395	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36109616	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4038586	1.00[ASN][1000 genomes]
rs4470449	1.00[ASN][1000 genomes]
rs66509730	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67145204	1.00[ASN][1000 genomes]
rs67382287	1.00[ASN][1000 genomes]
rs6767889	1.00[ASN][1000 genomes]
rs6806123	1.00[ASN][1000 genomes]
rs71336069	1.00[ASN][1000 genomes]
rs71336080	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230043	1.00[ASN][1000 genomes]
rs73230099	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73231903	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809269	1.00[ASN][1000 genomes]
rs9809988	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813376	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819856	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820717	1.00[ASN][1000 genomes]
rs9828976	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838884	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840500	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845862	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847427	1.00[ASN][1000 genomes]
rs9850364	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857833	1.00[ASN][1000 genomes]
rs9858560	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860879	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865995	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867325	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871184	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873536	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875770	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879531	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881831	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136539400-136543800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:136539400-136547000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:136539800-136553600	Weak transcription	Hela-S3	cervix
4	chr3:136540400-136544600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:136540800-136555200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links