Variant report

Variant	rs4470449
Chromosome Location	chr3:136719278-136719279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10513018	1.00[ASW][hapmap]
rs1052620	1.00[ASN][1000 genomes]
rs13062352	1.00[ASN][1000 genomes]
rs13080786	1.00[ASN][1000 genomes]
rs13314357	1.00[ASN][1000 genomes]
rs13433683	1.00[ASN][1000 genomes]
rs17365792	1.00[ASN][1000 genomes]
rs1872239	1.00[ASN][1000 genomes]
rs2176269	1.00[ASN][1000 genomes]
rs28370972	1.00[ASN][1000 genomes]
rs28489326	1.00[ASN][1000 genomes]
rs34564818	1.00[ASN][1000 genomes]
rs34645606	1.00[ASN][1000 genomes]
rs35096613	1.00[ASN][1000 genomes]
rs35100027	1.00[ASN][1000 genomes]
rs35198484	1.00[ASN][1000 genomes]
rs35210994	1.00[ASN][1000 genomes]
rs35422852	1.00[ASN][1000 genomes]
rs35880395	1.00[ASN][1000 genomes]
rs36109616	1.00[ASN][1000 genomes]
rs66509730	1.00[ASN][1000 genomes]
rs71336080	1.00[ASN][1000 genomes]
rs73230099	1.00[ASN][1000 genomes]
rs73231903	1.00[ASN][1000 genomes]
rs9809988	1.00[ASN][1000 genomes]
rs9813376	1.00[ASN][1000 genomes]
rs9819856	1.00[ASN][1000 genomes]
rs9828976	1.00[ASN][1000 genomes]
rs9838884	1.00[ASN][1000 genomes]
rs9840500	1.00[ASN][1000 genomes]
rs9845862	1.00[ASN][1000 genomes]
rs9850364	1.00[ASN][1000 genomes]
rs9858560	1.00[ASN][1000 genomes]
rs9860879	1.00[ASN][1000 genomes]
rs9865995	1.00[ASN][1000 genomes]
rs9867325	1.00[ASN][1000 genomes]
rs9871184	1.00[ASN][1000 genomes]
rs9873536	1.00[ASN][1000 genomes]
rs9879531	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136703800-136732400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:136704000-136730600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:136704800-136731000	Weak transcription	HSMMtube	muscle
4	chr3:136708800-136720000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:136710000-136731000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:136713600-136732800	Weak transcription	Primary T cells from cord blood	blood
7	chr3:136714000-136730800	Weak transcription	HSMM	muscle
8	chr3:136714400-136730800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:136715000-136729000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:136715200-136731000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:136715200-136733000	Weak transcription	Left Ventricle	heart
12	chr3:136715400-136719400	Weak transcription	Esophagus	oesophagus
13	chr3:136715400-136730800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:136715600-136726000	Weak transcription	Fetal Thymus	thymus
15	chr3:136715600-136727000	Weak transcription	Thymus	Thymus
16	chr3:136715600-136730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:136715800-136722800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:136715800-136730400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:136717400-136720600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:136718200-136720000	Weak transcription	Hela-S3	cervix
21	chr3:136718600-136720400	Strong transcription	NHEK	skin
22	chr3:136718800-136719600	Enhancers	HepG2	liver
23	chr3:136719000-136720600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:136719000-136720600	Strong transcription	HMEC	breast

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