Variant report
| Variant | rs35970869 |
|---|---|
| Chromosome Location | chr13:93083098-93083099 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93070548..93072245-chr13:93081774..93084405,2 | K562 | blood: | |
| 2 | chr13:93070745..93072680-chr13:93082905..93085536,2 | K562 | blood: | |
| 3 | chr13:93079626..93082261-chr13:93082433..93085843,3 | K562 | blood: | |
| 4 | chr13:92986047..92988836-chr13:93080866..93083328,2 | K562 | blood: | |
| 5 | chr13:93082498..93084409-chr13:93214382..93216049,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12854568 | 1.00[AFR][1000 genomes] |
| rs12865759 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12869734 | 1.00[AFR][1000 genomes] |
| rs12871110 | 1.00[AFR][1000 genomes] |
| rs12871876 | 1.00[AFR][1000 genomes] |
| rs12875735 | 1.00[AFR][1000 genomes] |
| rs12876085 | 1.00[AFR][1000 genomes] |
| rs12876767 | 1.00[AFR][1000 genomes] |
| rs12877979 | 1.00[AFR][1000 genomes] |
| rs34004765 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34022722 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34037601 | 1.00[AFR][1000 genomes] |
| rs34087014 | 1.00[EUR][1000 genomes] |
| rs34240704 | 1.00[AFR][1000 genomes] |
| rs34322289 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34453614 | 1.00[AFR][1000 genomes] |
| rs34669502 | 1.00[AFR][1000 genomes] |
| rs34708656 | 1.00[AFR][1000 genomes] |
| rs34719909 | 1.00[AFR][1000 genomes] |
| rs35243013 | 1.00[AFR][1000 genomes] |
| rs35254585 | 1.00[AFR][1000 genomes] |
| rs35352976 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35609677 | 1.00[AFR][1000 genomes] |
| rs35629298 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36048472 | 1.00[AFR][1000 genomes] |
| rs36076510 | 1.00[AFR][1000 genomes] |
| rs71427554 | 1.00[AFR][1000 genomes] |
| rs71427573 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93082800-93083200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 2 | chr13:93082800-93083200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
