Variant report

Variant	rs12876085
Chromosome Location	chr13:92995520-92995521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:92995346-92995617	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr13:92995358-92995673	H1-neurons	neurons:	n/a	n/a
3	TAL1	chr13:92995339-92995522	K562	blood:	n/a	n/a
4	ZNF274	chr13:92993667-92996209	K562	blood:	n/a	n/a
5	UBTF	chr13:92995407-92995604	K562	blood:	n/a	n/a

Variant related genes	Relation type
GPC5-AS2	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12854568	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12855057	1.00[EUR][1000 genomes]
rs12864687	0.83[EUR][1000 genomes]
rs12865759	1.00[AFR][1000 genomes]
rs12869734	1.00[AFR][1000 genomes]
rs12871110	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12871876	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12873529	0.83[EUR][1000 genomes]
rs12874078	0.81[EUR][1000 genomes]
rs12874625	0.91[EUR][1000 genomes]
rs12874656	0.91[EUR][1000 genomes]
rs12875735	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12876767	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12877979	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34004765	1.00[AFR][1000 genomes]
rs34022722	1.00[AFR][1000 genomes]
rs34037601	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34240704	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34322289	1.00[AFR][1000 genomes]
rs34453614	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34669502	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34708656	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34719909	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34749343	1.00[EUR][1000 genomes]
rs35243013	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35254585	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35352976	1.00[AFR][1000 genomes]
rs35609677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35629298	1.00[AFR][1000 genomes]
rs35919197	1.00[EUR][1000 genomes]
rs35970869	1.00[AFR][1000 genomes]
rs36048472	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36076510	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71427543	0.83[EUR][1000 genomes]
rs71427545	1.00[EUR][1000 genomes]
rs71427549	1.00[EUR][1000 genomes]
rs71427550	1.00[EUR][1000 genomes]
rs71427551	1.00[EUR][1000 genomes]
rs71427552	1.00[EUR][1000 genomes]
rs71427553	1.00[EUR][1000 genomes]
rs71427554	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427573	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv976279	chr13:92988323-92996254	Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv977268	chr13:92992054-92996254	Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92994400-92998200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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