Variant report

Variant	rs71427553
Chromosome Location	chr13:92951547-92951548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12854568	1.00[EUR][1000 genomes]
rs12855057	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12864687	0.83[EUR][1000 genomes]
rs12871110	1.00[EUR][1000 genomes]
rs12871876	0.91[EUR][1000 genomes]
rs12873529	0.83[EUR][1000 genomes]
rs12874078	0.81[EUR][1000 genomes]
rs12874625	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12874656	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12875735	1.00[EUR][1000 genomes]
rs12876085	1.00[EUR][1000 genomes]
rs12876767	1.00[EUR][1000 genomes]
rs12877979	1.00[EUR][1000 genomes]
rs34037601	1.00[EUR][1000 genomes]
rs34240704	1.00[EUR][1000 genomes]
rs34453614	1.00[EUR][1000 genomes]
rs34669502	1.00[EUR][1000 genomes]
rs34708656	1.00[EUR][1000 genomes]
rs34719909	1.00[EUR][1000 genomes]
rs34749343	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35243013	1.00[EUR][1000 genomes]
rs35254585	1.00[EUR][1000 genomes]
rs35609677	1.00[EUR][1000 genomes]
rs35919197	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36048472	1.00[EUR][1000 genomes]
rs36076510	0.83[EUR][1000 genomes]
rs71427543	0.83[EUR][1000 genomes]
rs71427545	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427549	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427550	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427551	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427552	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71427554	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92950800-92951600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:92951000-92951600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:92951000-92952600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:92951200-92952400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links