Variant report

Variant	rs12864687
Chromosome Location	chr13:92915107-92915108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12853588	1.00[YRI][hapmap]
rs12854568	0.83[EUR][1000 genomes]
rs12855057	0.83[EUR][1000 genomes]
rs12864496	1.00[CEU][hapmap]
rs12865759	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12868141	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12868999	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12869734	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12871110	0.83[EUR][1000 genomes]
rs12871876	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12873529	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12874078	0.83[EUR][1000 genomes]
rs12874625	0.92[EUR][1000 genomes]
rs12874656	0.92[EUR][1000 genomes]
rs12875735	0.83[EUR][1000 genomes]
rs12876085	0.83[EUR][1000 genomes]
rs12876767	0.83[EUR][1000 genomes]
rs12877104	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12877979	0.83[EUR][1000 genomes]
rs34037601	0.83[EUR][1000 genomes]
rs34240704	0.83[EUR][1000 genomes]
rs34453614	0.83[EUR][1000 genomes]
rs34669502	0.83[EUR][1000 genomes]
rs34708656	0.83[EUR][1000 genomes]
rs34719909	0.83[EUR][1000 genomes]
rs34749343	0.83[EUR][1000 genomes]
rs35243013	0.83[EUR][1000 genomes]
rs35254585	0.83[EUR][1000 genomes]
rs35609677	0.83[EUR][1000 genomes]
rs35919197	0.83[EUR][1000 genomes]
rs36048472	0.83[EUR][1000 genomes]
rs36076510	1.00[EUR][1000 genomes]
rs71427543	1.00[EUR][1000 genomes]
rs71427545	0.83[EUR][1000 genomes]
rs71427549	0.83[EUR][1000 genomes]
rs71427550	0.83[EUR][1000 genomes]
rs71427551	0.83[EUR][1000 genomes]
rs71427552	0.83[EUR][1000 genomes]
rs71427553	0.83[EUR][1000 genomes]
rs71427554	0.83[EUR][1000 genomes]
rs7328919	1.00[CEU][hapmap]
rs9561028	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92912800-92917600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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