Variant report
Variant | rs12869734 |
---|---|
Chromosome Location | chr13:93042392-93042393 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:93040364..93042788-chr13:93045821..93048248,2 | K562 | blood: | |
2 | chr13:93041866..93044276-chr13:93051654..93053677,3 | K562 | blood: | |
3 | chr13:93026262..93028061-chr13:93041707..93043886,2 | K562 | blood: | |
4 | chr13:93029774..93033381-chr13:93039131..93043022,5 | K562 | blood: | |
5 | chr13:93026561..93029613-chr13:93041707..93044561,3 | K562 | blood: | |
6 | chr13:93036860..93038900-chr13:93040380..93043819,4 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12853588 | 1.00[YRI][hapmap] |
rs12854568 | 1.00[AFR][1000 genomes] |
rs12864687 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12865759 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs12868141 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12868999 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12871110 | 1.00[AFR][1000 genomes] |
rs12871876 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs12873529 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12875735 | 1.00[AFR][1000 genomes] |
rs12876085 | 1.00[AFR][1000 genomes] |
rs12876767 | 1.00[AFR][1000 genomes] |
rs12877104 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12877979 | 1.00[AFR][1000 genomes] |
rs34004765 | 1.00[AFR][1000 genomes] |
rs34022722 | 1.00[AFR][1000 genomes] |
rs34037601 | 1.00[AFR][1000 genomes] |
rs34240704 | 1.00[AFR][1000 genomes] |
rs34322289 | 1.00[AFR][1000 genomes] |
rs34453614 | 1.00[AFR][1000 genomes] |
rs34669502 | 1.00[AFR][1000 genomes] |
rs34708656 | 1.00[AFR][1000 genomes] |
rs34719909 | 1.00[AFR][1000 genomes] |
rs35243013 | 1.00[AFR][1000 genomes] |
rs35254585 | 1.00[AFR][1000 genomes] |
rs35352976 | 1.00[AFR][1000 genomes] |
rs35609677 | 1.00[AFR][1000 genomes] |
rs35629298 | 1.00[AFR][1000 genomes] |
rs35970869 | 1.00[AFR][1000 genomes] |
rs36048472 | 1.00[AFR][1000 genomes] |
rs36076510 | 1.00[AFR][1000 genomes] |
rs71427554 | 1.00[AFR][1000 genomes] |
rs71427573 | 1.00[AFR][1000 genomes] |
rs7328919 | 1.00[CEU][hapmap] |
rs9561028 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1050788 | chr13:92953101-93045491 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv1051394 | chr13:92959102-93049128 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1037815 | chr13:92959102-93052008 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv900903 | chr13:92999147-93043373 | Enhancers ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:93041600-93042600 | Weak transcription | Fetal Lung | lung |
2 | chr13:93042000-93043200 | Enhancers | Pancreatic Islets | Pancreatic Islet |