Variant report

Variant	rs35974452
Chromosome Location	chr9:6646268-6646269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:6646248-6646641	MCF-7	breast:	n/a	chr9:6646476-6646487
2	BHLHE40	chr9:6645539-6646985	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:6646257-6646603	GM12878	blood:	n/a	n/a
4	MAX	chr9:6645576-6646557	GM12878	blood:	n/a	chr9:6645743-6645753 chr9:6645824-6645834
5	NFIC	chr9:6645584-6646846	GM12878	blood:	n/a	n/a
6	BCLAF1	chr9:6645684-6646735	GM12878	blood:	n/a	chr9:6645822-6645831
7	WRNIP1	chr9:6646008-6646713	GM12878	blood:	n/a	n/a
8	POU2F2	chr9:6646250-6646629	GM12878	blood:	n/a	n/a
9	MTA3	chr9:6645591-6646817	GM12878	blood:	n/a	n/a
10	REST	chr9:6645676-6646473	A549	lung:	n/a	n/a
11	RUNX3	chr9:6645469-6646838	GM12878	blood:	n/a	n/a
12	SIN3A	chr9:6645647-6646553	GM12878	blood:	n/a	n/a
13	PAX5	chr9:6646245-6646657	GM12891	blood:	n/a	n/a
14	BCLAF1	chr9:6646220-6646693	GM12878	blood:	n/a	n/a
15	POLR2A	chr9:6645515-6646612	GM12878	blood:	n/a	n/a
16	KAP1	chr9:6645688-6646539	HEK293	kidney:	n/a	n/a
17	TCF12	chr9:6645447-6646424	A549	lung:	n/a	n/a
18	POLR2A	chr9:6644855-6647002	HepG2	liver:	n/a	n/a
19	ZNF263	chr9:6645547-6646670	HEK293-T-REx	kidney:	n/a	chr9:6646351-6646372 chr9:6646316-6646337
20	TAF1	chr9:6645472-6646282	A549	lung:	n/a	n/a
21	MAX	chr9:6645525-6646730	A549	lung:	n/a	chr9:6645743-6645753 chr9:6645824-6645834
22	MAZ	chr9:6645580-6646530	GM12878	blood:	n/a	chr9:6645743-6645753 chr9:6645824-6645834
23	TCF7L2	chr9:6645850-6646357	PANC-1	pancreas:	n/a	chr9:6646138-6646152
24	MTA3	chr9:6645945-6646624	GM12878	blood:	n/a	n/a
25	TBP	chr9:6645579-6646588	GM12878	blood:	n/a	n/a
26	MAX	chr9:6645505-6647156	A549	lung:	n/a	chr9:6645743-6645753 chr9:6645824-6645834
27	CEBPB	chr9:6645941-6646628	Hela-S3	cervix:	n/a	chr9:6646476-6646487
28	TCF7L2	chr9:6645741-6646437	HCT-116	colon:	n/a	chr9:6646138-6646152
29	CEBPB	chr9:6645827-6646639	GM12878	blood:	n/a	chr9:6646476-6646487
30	RUNX3	chr9:6645469-6646719	GM12878	blood:	n/a	n/a
31	SIN3AK20	chr9:6646265-6646642	A549	lung:	n/a	n/a
32	SIN3A	chr9:6644173-6646379	H1-hESC	embryonic stem cell:	n/a	chr9:6645582-6645595
33	TCF7L2	chr9:6646075-6646271	MCF-7	breast:	n/a	chr9:6646138-6646152
34	EGR1	chr9:6645538-6646289	HCT-116	colon:	n/a	chr9:6645817-6645831 chr9:6645800-6645810 chr9:6645798-6645811 chr9:6645817-6645832 chr9:6645813-6645835 chr9:6645818-6645831 chr9:6645822-6645832 chr9:6645815-6645829 chr9:6645818-6645828 chr9:6645824-6645837 chr9:6645798-6645811 chr9:6645818-6645831 chr9:6645818-6645831 chr9:6645823-6645838 chr9:6645819-6645828 chr9:6645818-6645831 chr9:6645824-6645837 chr9:6645799-6645813 chr9:6645797-6645812
35	YY1	chr9:6646253-6646707	GM12878	blood:	n/a	n/a
36	TCF7L2	chr9:6645771-6646615	Hela-S3	cervix:	n/a	chr9:6646138-6646152
37	PML	chr9:6645430-6646852	GM12878	blood:	n/a	n/a
38	MAX	chr9:6645562-6646535	A549	lung:	n/a	chr9:6645743-6645753 chr9:6645824-6645834
39	CHD1	chr9:6645839-6646650	GM12878	blood:	n/a	n/a
40	FOXM1	chr9:6646136-6646809	GM12878	blood:	n/a	n/a
41	POLR2A	chr9:6645520-6646650	GM12891	blood:	n/a	n/a
42	CEBPB	chr9:6646118-6646677	A549	lung:	n/a	chr9:6646476-6646487
43	FOXM1	chr9:6645890-6646841	GM12878	blood:	n/a	n/a
44	GTF3C2	chr9:6646149-6646714	Hela-S3	cervix:	n/a	n/a
45	TCF7L2	chr9:6645717-6646611	HEK293	kidney:	n/a	chr9:6646138-6646152
46	TCF7L2	chr9:6645884-6646306	Hela-S3	cervix:	n/a	chr9:6646138-6646152

Variant related genes	Relation type
GLDC	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34073615	0.83[AMR][1000 genomes]
rs34248027	0.83[AMR][1000 genomes]
rs34407041	0.83[AMR][1000 genomes]
rs34848653	0.83[AMR][1000 genomes]
rs66548202	0.83[AMR][1000 genomes]
rs66771578	0.83[AMR][1000 genomes]
rs72695582	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv1025627	chr9:6523056-6648098	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
8	nsv613206	chr9:6525753-6686738	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
9	esv3324686	chr9:6528411-6728310	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
11	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
12	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
13	nsv1018870	chr9:6548393-6708345	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
14	nsv892164	chr9:6555079-6664282	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv931094	chr9:6558442-6672439	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
17	nsv1016600	chr9:6566610-6695986	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
18	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
19	nsv613207	chr9:6567841-6676953	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
21	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
22	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
23	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
24	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
25	nsv1034936	chr9:6575976-6708345	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
26	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
27	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
28	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
29	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
30	nsv892165	chr9:6602821-6701530	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
32	nsv1018415	chr9:6605417-6723788	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
33	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
34	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
35	nsv1033268	chr9:6619819-6681443	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
36	nsv1023706	chr9:6619819-6745551	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
37	nsv519777	chr9:6620059-6750556	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
38	nsv613209	chr9:6620059-6750556	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
39	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
40	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
41	nsv613210	chr9:6635045-6750556	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
42	esv2764163	chr9:6637145-6673830	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
43	nsv521556	chr9:6641895-6676953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
44	nsv892167	chr9:6641895-6701530	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
45	nsv892168	chr9:6641895-6703997	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
46	nsv892169	chr9:6641895-6715730	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
47	nsv892170	chr9:6641895-6723861	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6643000-6647000	Active TSS	GM12878-XiMat	blood
2	chr9:6643400-6646600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:6643600-6646800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:6643800-6648000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:6644000-6646400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:6644000-6646400	Active TSS	Fetal Brain Female	brain
7	chr9:6644000-6646600	Bivalent/Poised TSS	NHEK	skin
8	chr9:6644000-6646800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:6644200-6646400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:6644200-6646400	Active TSS	Brain Angular Gyrus	brain
11	chr9:6644200-6646400	Active TSS	Brain Hippocampus Middle	brain
12	chr9:6644200-6646600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:6644200-6646600	Active TSS	Brain Anterior Caudate	brain
14	chr9:6644200-6646600	Active TSS	Brain Cingulate Gyrus	brain
15	chr9:6644200-6646600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr9:6644200-6646800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:6644200-6647200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr9:6644400-6646600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
19	chr9:6644400-6647000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:6644600-6646600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr9:6644600-6647000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:6644800-6646400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:6644800-6646400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
24	chr9:6645000-6646600	Active TSS	Aorta	Aorta
25	chr9:6645000-6647000	Active TSS	HepG2	liver
26	chr9:6645000-6647200	Active TSS	A549	lung
27	chr9:6645200-6646400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:6645200-6646400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:6645200-6646400	Bivalent/Poised TSS	Primary T killer memory cells from peripheral blood	blood
30	chr9:6645200-6646400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
31	chr9:6645200-6646400	Active TSS	Psoas Muscle	Psoas
32	chr9:6645200-6646400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
33	chr9:6645200-6646400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr9:6645200-6646600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:6645200-6646600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:6645200-6646600	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:6645200-6646600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
38	chr9:6645200-6646600	Bivalent Enhancer	Fetal Heart	heart
39	chr9:6645200-6646600	Bivalent/Poised TSS	Placenta	Placenta
40	chr9:6645200-6647000	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr9:6645200-6647000	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr9:6645200-6647200	Active TSS	H1 Cell Line	embryonic stem cell
43	chr9:6645200-6647200	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr9:6645200-6647200	Active TSS	Liver	Liver
45	chr9:6645200-6647400	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr9:6645400-6646400	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr9:6645400-6646600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:6645400-6646600	Active TSS	Esophagus	oesophagus
49	chr9:6645600-6646400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:6645600-6646400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood

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