Variant report

Variant	rs35975995
Chromosome Location	chr6:145276522-145276523
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11962423	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11969952	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34008244	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35177773	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57121708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57809661	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58954256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59332548	0.89[EUR][1000 genomes]
rs59595863	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60386360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60643898	0.89[EUR][1000 genomes]
rs60703523	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570664	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6570665	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6904808	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612211	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612214	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612215	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612220	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612232	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612249	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612251	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612256	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612273	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612275	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612286	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613905	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613930	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73613942	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613944	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613947	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613948	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613955	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73613983	1.00[ASN][1000 genomes]
rs73781204	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739415	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7748391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7756445	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7759704	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7759730	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7773726	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9322007	1.00[ASN][1000 genomes]
rs9322010	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9322011	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9322012	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9322013	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9322014	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9376875	0.89[EUR][1000 genomes]
rs9386090	0.89[EUR][1000 genomes]
rs9390258	0.89[EUR][1000 genomes]
rs9390259	0.89[EUR][1000 genomes]
rs9390261	0.89[EUR][1000 genomes]
rs9403632	0.89[EUR][1000 genomes]
rs9484929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484932	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9497136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497137	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497144	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497149	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9497152	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9497153	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145274200-145277000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:145274400-145276800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:145274400-145279600	Enhancers	Osteobl	bone
5	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:145274800-145276800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:145274800-145277400	Enhancers	HSMM	muscle
8	chr6:145274800-145278600	Enhancers	NH-A	brain
9	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:145275600-145276800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:145275600-145276800	Weak transcription	NHDF-Ad	bronchial
12	chr6:145275800-145277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:145275800-145277000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:145275800-145278400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:145275800-145282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:145276000-145276800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:145276000-145277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:145276000-145277000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:145276000-145277000	Weak transcription	A549	lung
20	chr6:145276000-145278200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:145276400-145276800	Weak transcription	HSMMtube	muscle

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