Variant report

Variant	rs9390261
Chromosome Location	chr6:145242051-145242052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs35975995	0.89[EUR][1000 genomes]
rs57809661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59332548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60703523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904808	1.00[EUR][1000 genomes]
rs73612211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612273	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612275	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781204	1.00[EUR][1000 genomes]
rs9376875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484930	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145234400-145243400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:145240400-145244400	Enhancers	Liver	Liver
3	chr6:145240600-145243600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:145241400-145242600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:145241600-145242800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:145241600-145243400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:145241600-145243400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:145241600-145243800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:145241600-145244200	Enhancers	NHDF-Ad	bronchial
10	chr6:145241800-145242600	Enhancers	Gastric	stomach
11	chr6:145241800-145242800	Enhancers	Stomach Mucosa	stomach
12	chr6:145241800-145243000	Enhancers	Fetal Intestine Small	intestine
13	chr6:145241800-145243800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:145241800-145243800	Enhancers	Pancreas	Pancrea
15	chr6:145241800-145244200	Enhancers	A549	lung
16	chr6:145242000-145242200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:145242000-145242200	Enhancers	HSMMtube	muscle
18	chr6:145242000-145243200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:145242000-145243400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:145242000-145243400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links