Variant report

Variant	rs6904808
Chromosome Location	chr6:145207239-145207240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145199350..145203488-chr6:145205369..145208032,3	K562	blood:
2	chr6:145201257..145203488-chr6:145205369..145207840,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11962423	0.90[ASN][1000 genomes]
rs11969952	0.90[ASN][1000 genomes]
rs34008244	0.90[ASN][1000 genomes]
rs35177773	0.90[ASN][1000 genomes]
rs35975995	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4398764	1.00[MEX][hapmap]
rs57121708	0.90[ASN][1000 genomes]
rs57809661	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58954256	0.90[ASN][1000 genomes]
rs59332548	1.00[EUR][1000 genomes]
rs59595863	0.90[ASN][1000 genomes]
rs60386360	0.90[ASN][1000 genomes]
rs60643898	1.00[EUR][1000 genomes]
rs60703523	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570664	0.90[ASN][1000 genomes]
rs6570665	0.90[ASN][1000 genomes]
rs73612211	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612214	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612215	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612220	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612232	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612249	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612251	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612256	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612273	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612275	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612286	0.90[ASN][1000 genomes]
rs73613905	0.90[ASN][1000 genomes]
rs73613906	0.90[ASN][1000 genomes]
rs73613909	0.90[ASN][1000 genomes]
rs73613921	0.90[ASN][1000 genomes]
rs73613930	0.90[ASN][1000 genomes]
rs73613932	0.90[ASN][1000 genomes]
rs73613933	0.90[ASN][1000 genomes]
rs73613935	0.90[ASN][1000 genomes]
rs73613942	0.90[ASN][1000 genomes]
rs73613944	0.90[ASN][1000 genomes]
rs73613947	0.90[ASN][1000 genomes]
rs73613948	0.90[ASN][1000 genomes]
rs73613955	0.90[ASN][1000 genomes]
rs73613983	0.90[ASN][1000 genomes]
rs73781204	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739415	0.90[ASN][1000 genomes]
rs7748391	0.90[ASN][1000 genomes]
rs7756445	0.90[ASN][1000 genomes]
rs7759704	0.90[ASN][1000 genomes]
rs7759730	0.90[ASN][1000 genomes]
rs7762384	1.00[MEX][hapmap]
rs7773726	0.90[ASN][1000 genomes]
rs869590	1.00[MEX][hapmap]
rs9322007	0.90[ASN][1000 genomes]
rs9322010	0.90[ASN][1000 genomes]
rs9322011	0.90[ASN][1000 genomes]
rs9322012	0.90[ASN][1000 genomes]
rs9322013	0.90[ASN][1000 genomes]
rs9322014	0.90[ASN][1000 genomes]
rs9376875	1.00[EUR][1000 genomes]
rs9376876	0.89[EUR][1000 genomes]
rs9386090	1.00[EUR][1000 genomes]
rs9390258	1.00[EUR][1000 genomes]
rs9390259	1.00[EUR][1000 genomes]
rs9390261	1.00[EUR][1000 genomes]
rs9403632	1.00[EUR][1000 genomes]
rs9484929	0.90[ASN][1000 genomes]
rs9484930	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9484932	0.90[ASN][1000 genomes]
rs9497136	0.90[ASN][1000 genomes]
rs9497137	0.90[ASN][1000 genomes]
rs9497144	0.90[ASN][1000 genomes]
rs9497145	0.90[ASN][1000 genomes]
rs9497149	0.90[ASN][1000 genomes]
rs9497152	0.90[ASN][1000 genomes]
rs9497153	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145206600-145208800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:145206600-145208800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:145207000-145209400	Enhancers	K562	blood

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