Variant report

Variant	rs9376876
Chromosome Location	chr6:145243756-145243757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57809661	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59332548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60703523	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6904808	0.89[EUR][1000 genomes]
rs73612211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612214	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612215	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612232	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612273	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73612275	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73781204	0.89[EUR][1000 genomes]
rs9376875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145240400-145244400	Enhancers	Liver	Liver
2	chr6:145241600-145243800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:145241600-145244200	Enhancers	NHDF-Ad	bronchial
4	chr6:145241800-145243800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145241800-145243800	Enhancers	Pancreas	Pancrea
6	chr6:145241800-145244200	Enhancers	A549	lung
7	chr6:145242400-145243800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:145242400-145243800	Enhancers	HepG2	liver
9	chr6:145242600-145243800	Enhancers	Adipose Nuclei	Adipose
10	chr6:145242600-145243800	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:145243200-145243800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr6:145243200-145243800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:145243200-145244400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:145243400-145243800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:145243400-145243800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:145243400-145243800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:145243400-145243800	Enhancers	Fetal Lung	lung
18	chr6:145243400-145243800	Enhancers	Placenta	Placenta
19	chr6:145243400-145243800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:145243400-145243800	Enhancers	Small Intestine	intestine
21	chr6:145243400-145244000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:145243400-145244000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:145243400-145244200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:145243400-145244400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:145243400-145244400	Enhancers	Hela-S3	cervix
26	chr6:145243400-145244400	Enhancers	HMEC	breast
27	chr6:145243600-145243800	Enhancers	Stomach Mucosa	stomach
28	chr6:145243600-145244000	Enhancers	HSMMtube	muscle
29	chr6:145243600-145244400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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