Variant report

Variant	rs57809661
Chromosome Location	chr6:145222553-145222554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11962423	1.00[ASN][1000 genomes]
rs11969952	1.00[ASN][1000 genomes]
rs34008244	1.00[ASN][1000 genomes]
rs35177773	1.00[ASN][1000 genomes]
rs35975995	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57121708	1.00[ASN][1000 genomes]
rs58954256	1.00[ASN][1000 genomes]
rs59332548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59595863	1.00[ASN][1000 genomes]
rs60386360	1.00[ASN][1000 genomes]
rs60643898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60703523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570664	1.00[ASN][1000 genomes]
rs6570665	1.00[ASN][1000 genomes]
rs6904808	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73612211	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612214	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612215	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612286	1.00[ASN][1000 genomes]
rs73613905	1.00[ASN][1000 genomes]
rs73613906	1.00[ASN][1000 genomes]
rs73613909	1.00[ASN][1000 genomes]
rs73613921	1.00[ASN][1000 genomes]
rs73613930	1.00[ASN][1000 genomes]
rs73613932	1.00[ASN][1000 genomes]
rs73613933	1.00[ASN][1000 genomes]
rs73613935	1.00[ASN][1000 genomes]
rs73613942	1.00[ASN][1000 genomes]
rs73613944	1.00[ASN][1000 genomes]
rs73613947	1.00[ASN][1000 genomes]
rs73613948	1.00[ASN][1000 genomes]
rs73613955	1.00[ASN][1000 genomes]
rs73613983	1.00[ASN][1000 genomes]
rs73781204	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739415	1.00[ASN][1000 genomes]
rs7748391	1.00[ASN][1000 genomes]
rs7756445	1.00[ASN][1000 genomes]
rs7759704	1.00[ASN][1000 genomes]
rs7759730	1.00[ASN][1000 genomes]
rs7773726	1.00[ASN][1000 genomes]
rs9322007	1.00[ASN][1000 genomes]
rs9322010	1.00[ASN][1000 genomes]
rs9322011	1.00[ASN][1000 genomes]
rs9322012	1.00[ASN][1000 genomes]
rs9322013	1.00[ASN][1000 genomes]
rs9322014	1.00[ASN][1000 genomes]
rs9376875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9376876	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386090	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9403632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484929	1.00[ASN][1000 genomes]
rs9484930	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484932	1.00[ASN][1000 genomes]
rs9497136	1.00[ASN][1000 genomes]
rs9497137	1.00[ASN][1000 genomes]
rs9497144	1.00[ASN][1000 genomes]
rs9497145	1.00[ASN][1000 genomes]
rs9497149	1.00[ASN][1000 genomes]
rs9497152	1.00[ASN][1000 genomes]
rs9497153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145219200-145222600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:145220200-145222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:145222000-145223400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:145222200-145224000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145222400-145223000	Weak transcription	NHDF-Ad	bronchial

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