Variant report

Variant	rs36069924
Chromosome Location	chr4:31035261-31035262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10939327	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11736953	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11945857	0.80[ASN][1000 genomes]
rs4348052	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4438724	0.93[ASN][1000 genomes]
rs60167602	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6837499	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73113493	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73113497	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73115169	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73115191	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31032800-31036400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:31033000-31042400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:31033200-31036000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:31033200-31036200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:31033200-31036200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:31033600-31036000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:31034200-31036200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:31034200-31043000	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links