Variant report

Variant	rs73115169
Chromosome Location	chr4:31043665-31043666
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10939327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506199	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12641003	0.90[ASN][1000 genomes]
rs12645319	0.87[EUR][1000 genomes]
rs1499471	0.89[EUR][1000 genomes]
rs2036244	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36069924	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4348052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56854499	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60167602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66472059	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66982156	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67114056	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67840794	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6837499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852560	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72619201	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73113493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73113497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73115201	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73117110	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9684179	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31042000-31045400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:31042200-31044000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:31042200-31044000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:31042400-31043800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:31042400-31044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:31042600-31043800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:31042600-31043800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:31042600-31044000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:31042600-31045600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:31042800-31044200	Enhancers	Fetal Heart	heart
11	chr4:31043000-31043800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:31043000-31043800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:31043000-31043800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:31043000-31043800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:31043000-31043800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:31043200-31043800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:31043200-31050600	Weak transcription	Psoas Muscle	Psoas
18	chr4:31043400-31044000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:31043400-31045600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:31043600-31043800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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