Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10939327	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11736953	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12506199	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12645319	0.92[EUR][1000 genomes]
rs1499471	0.94[EUR][1000 genomes]
rs2036244	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4348052	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56854499	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60167602	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66982156	0.80[AMR][1000 genomes]
rs67114056	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67840794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6837499	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6852560	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72619201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73113493	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73113497	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73115169	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73115191	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73115201	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73117110	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9684179	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31070600-31088400	Weak transcription	Fetal Stomach	stomach
3	chr4:31077800-31088600	Weak transcription	Aorta	Aorta
4	chr4:31082000-31087600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:31083400-31086800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:31083400-31088200	Weak transcription	NH-A	brain
7	chr4:31083600-31086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:31083800-31086800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:31084000-31090000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:31085200-31092600	Enhancers	Fetal Heart	heart

Quick Search: