Variant report

Variant	rs73113493
Chromosome Location	chr4:31036026-31036027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10939327	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736953	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506199	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12641003	0.89[ASN][1000 genomes]
rs12645319	0.84[EUR][1000 genomes]
rs1499471	0.86[EUR][1000 genomes]
rs2036244	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36069924	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4348052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56854499	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60167602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66472059	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66982156	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67114056	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67840794	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6837499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6852560	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72619201	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73113497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73115169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73115191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73115201	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73117110	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9684179	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31032800-31036400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:31033000-31042400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:31033200-31036200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:31033200-31036200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:31034200-31036200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:31034200-31043000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:31036000-31036600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:31036000-31036800	Enhancers	HUES64 Cell Line	embryonic stem cell

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